Mercenaria mercenaria (northern quahog): 123552310
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Entry
123552310 CDS
T07835
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03022
Basal transcription factors
mmer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123552310
09124 Replication and repair
03420 Nucleotide excision repair
123552310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmer03021
]
123552310
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123552310
Transcription machinery [BR:
mmer03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123552310
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123552310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ANT
Motif
Other DBs
NCBI-GeneID:
123552310
NCBI-ProteinID:
XP_053381178
EnsemblRapid:
LOC123552310
LinkDB
All DBs
Position
15:48023179..48039372
Genome browser
AA seq
460 aa
AA seq
DB search
MAALFSSRTLDCKDLHSYLKTLSSHILDRLYNHPATCLAVFRELPELAKHYVMRLLFVDQ
PVSQAVISLWVNNKHTNEHRIATRALTDLRIWYEQPLPGGMQGWILNMTFKANMKTALLG
GGKPWTGRGVAPLPPDKNSRDVDFLDKYALERWECVLHFMVGSREGADGVSRDTIEVLKH
SGLMKVDEGDPMPFITPGGFQFLLMDTASQIWFFMLQYLDMVDSRGLDLVECLSFLFQLS
FSTLGKDYSTDGMSDGQQKFLQHLREFGLVYQRKRKEKRYYPTRLAINLASGLTGIGTDS
HRQGFIVIETNYRVYAYTDSPLNIALLALFTEMLYRFPNMAVGNLSRDSVRAALMRGITA
EQIISFLRSHAHPEMMKEKPSLPAVIIDQVRLWELERDRFKFNDGVLYSQFLSQADFEKL
RDYAKELGVLVWDNNNKRVMVVSRAGHDTVKKYWKQQKQS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttgttttcatcgcggacgttagactgcaaggatttacacagttacctaaag
acattgtcctcccatatacttgacagattatataaccacccggcaacatgtctagctgtg
ttcagagaacttccagagttagccaagcattatgtgatgaggttgctgtttgtggatcag
ccagtatcacaggctgtcatttcactgtgggtcaacaacaagcatactaatgaacacagg
atagcaactagagctttaactgatcttagaatctggtatgaacaaccattaccaggtgga
atgcagggttggatcctcaacatgacctttaaagccaacatgaaaacagctcttttagga
ggtggtaaaccatggacaggaagaggtgtggctcccttgcctcctgataaaaacagccga
gacgtcgacttccttgataaatatgccctagaaagatgggagtgtgttttacactttatg
gttggttcaagagagggagcagatggggtcagtcgggatacaatagaggtgcttaaacat
tcaggacttatgaaagtcgatgaaggtgatcctatgccatttattacacctggaggtttt
cagtttttgctgatggacactgcttcacagatctggttctttatgctgcaataccttgat
atggttgatagtagaggcctggacctggtggaatgtctctcattcttgtttcaacttagt
ttctctactcttggaaaagactatagtacagatggtatgagcgatggtcagcagaagttt
ctacaacatttacgtgaatttggactggtttatcaacgaaagagaaaagagaagcggtat
tacccaacaagactggctatcaatttggcgtctgggcttactggtattggtacagactct
cacagacagggatttatagtcattgaaaccaattatagagtttacgcatatacagattct
ccgttgaatattgcattattagctttattcactgagatgttgtacagatttccaaatatg
gcagtgggtaacctgtctagggacagcgttagagcggctctgatgaggggaattactgca
gaacaaataataagttttctaagatctcatgcacatccagaaatgatgaaagagaaacca
tcactacctgcagttataattgatcaagtacgtctctgggaacttgaacgtgatagattt
aaattcaacgatggtgtgttatatagtcagttcctgtcacaagccgattttgaaaaactt
agggattatgccaaggagctgggagtattggtgtgggacaacaacaacaagcgagtgatg
gtcgtctctcgagctgggcatgatactgttaagaaatattggaaacagcagaaacaatct
taa
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