Mercenaria mercenaria (northern quahog): 123557014 Help Entry 123557014         CDS       T07835                                  Name (RefSeq) collagen alpha-1(XI) chain-like   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism mmer  Mercenaria mercenaria (northern quahog) Pathway mmer04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:mmer00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     123557014  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:mmer00536]     123557014 Glycosaminoglycan binding proteins [BR:mmer00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    123557014 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_3 Motif Other DBs NCBI-GeneID:  123557014 NCBI-ProteinID:  XP_045204120 EnsemblRapid:  LOC123557014 LinkDB All DBs Position 15:complement(65861890..65919836) Genome browser AA seq 1674 aa AA seqDB search MDLRTKTMAFVLFYLFVIFCPSQAANSILPTGSIDFMNEWYSDVSAASQPVFTEGMCPAR QGTGPDGAFEVDSSQSWSYSMSELAKDRFSSDNFSIILTFSSTSNAENTEMFRFTGEYGQ TDLAFLFGPGGSKLVYTGLVEDPNNIPEESVWNLPFGINADEWHRVAFSIVAGTVTLFHD GVIVGNMSESAFVDKYGHFTISGGDEPFRGKIQDLLYVPVDFAAYEHGYIYCPDCDFAFP KPDDNGFIFRSSNVDSYAVGGAEGNYSWGSAYDGDDMEAGYGLGMDKKETVYAVDKYGTQ MGSAMALGVPYGPPGPPGQRGPMGPPGPKGDTGFAGRDGLPGNNGLPGPPGNTLIIPMNI DGKHQSQREAFQLLLKQHMQSMRGAHGPQGMTGLPGMAGPPGDPGERGDEGLPGEQGPPG PMGMPGPDGPSGKRGRSGRDGARGPIGPLGDKGEAGYPGIPGRIGSKGDRGYQGSAGPMG PPGHDGEQGEQGEPGAPGPAGDQGLRGFMGPRGKPGPVGVPGIPGAEGAPGPKGNQGGIG SPGAPGQAGAPGPVGSPGPPGPLGPQGIPGAQGKPGLAGLPGPIGPPGIDGLKGTPGPKG DIGPLGLQGIIGYPGPRGTKGDTGARGLMGAKGNQGLTGFPGDRGDFGQKGDKGSVGDYG PIGPEGIEGSKGDRGPTGEDGPPGNQGEKGRIGTPGLPGYPGPPGLKGDSGGRGRRGKRG RSGKSGPPGPVGDRGDPGAQGQQGERGKTGAPGPVGPKGDNGVAGPPGPVGEQGIQGPPG MQGPPGPQGANGLPGKDGLRGAPGERGEPGQQGQVGATGPAGVMGPTGPPGDPGPVGDRG PPGNQGLPGDTGLPGQAGPPGERGPQGIAGDLGPPGPPGPQGFVGDRGYPGPPGRDGLPG DDGPEGPPGPQGEKGAEGIAGDSGPPGPMGPPGPPGFEGRRGTKGDMGIEGLPGDSGGQG PEGPRGHQGPAGPAGPPGQDGDKGEQGLPGPRGQKGEYGIQGPPGPQGPPGLQGSLGPPG HPGEPGIQGIQGPPGNKGSEGPRGLVGMSGNPGLQGPPGAPGPKGEHGDSGILGPPGAPG PQGPPGPTGGVGAPGLPGNPGSEGRIGPKGDPGDPGQPGRAGLNGVDGPPGPPGAPGEEG RPGVAGEPGPRGPPGIDGPKGHSGEFGPPGNPGPPGPTGPKGEAGLDGNEGKQGSPGPMG PVGIPGENGLQGPTGKQGPQGLPGVQGSAGESGPKGDRGLPGPLGQRGPPGPPGDQGRAG PSGPPGSPGQNGEAGPPGAPGSSGEPGVIGPAGPIGAKGEQGMKGAKGHHGRVGPTGLPG DQGPQGQPGIPGPPGPKGERGETGPMGPTGPPGADGATGPTGIEGPMGPKGEPGQDGPPG IPGPQGPPGPAGQPGGAQPYPSDLLGGGSDNLLVVRKRRSVQEHPAIVNLPDLEADFEEA MIAITENQVTLTEGVHMFVDKMWNHIVKVSNIVDELKYPPGSRESPASSCKDIKVSYEGY QDGMYWIDPNQGGVGDAIEVWCNMTGGGQTCVQPNEETDRAELRHWQNGEWFSEMDGGFE ITYNEQINALAMKSDVATQMFVIDCEGAAAWFDQDLQSTENAMTLLGLNEHLFETAELNG VTVLQDGCKDKTNGQTVFQLKTKSSRLPVIDFMPKDYSKSNQKFGFRAGAVCFL NT seq 5025 nt NT seq  +upstreamnt  +downstreamnt atggacttacggactaaaaccatggcatttgtgctattttatttatttgttatcttttgt ccatctcaggcagccaattcgattttaccaactggttccatagattttatgaacgaatgg tactcagatgtgagtgctgcaagtcagccggtgtttactgaagggatgtgcccggcaaga caaggcacgggtcccgatggtgcttttgaagtagactcgtcacaatcatggtcatacagc atgtcggaactagcaaaagatcgattttcaagcgacaatttttcaatcatattgacgttc agtagtacttcgaatgccgagaataccgagatgttcaggtttacaggagagtatgggcaa acagacctagcatttctctttggacctggcggatcgaaactcgtatatacaggcctcgtc gaagatccaaacaacattcctgaagaatctgtgtggaacttaccttttggaataaatgct gatgagtggcaccgcgtagcattcagtatagttgcaggaacggtaactctgtttcacgac ggtgtaattgttggtaacatgtcagaatcagcattcgtcgacaaatatggacatttcaca atttctggtggagatgaaccattcaggggtaagatccaggacctgctctacgtgcctgtt gactttgcggcatacgagcatggttacatatactgcccggattgtgattttgcgttcccg aagcccgatgacaacggattcattttcaggagtagcaatgtggatagctatgctgttgga ggggcagagggaaattattcttgggggtctgcctacgatggtgatgatatggaagcaggc tatgggcttggcatggacaagaaagaaactgtatatgctgtagacaaatacggaacacag atgggttcagccatggcattaggagtcccatacggcccaccaggaccacctggccaacgt ggaccaatgggaccaccgggacccaagggtgacacgggtttcgctggacgagatggtcta cccgggaacaatggacttccaggcccaccaggaaacactcttatcatcccgatgaatatc gacggtaaacatcaaagtcaaagagaggctttccagttacttctaaaacaacatatgcaa tctatgcgcggagcacacggtcctcagggaatgacaggtctaccaggaatggctggtcca ccaggagatcccggagagagaggagatgaaggtcttcccggagaacagggaccgccggga cccatgggtatgccaggaccggatggaccaagtggcaagagggggcgtagcggaagagat ggtgcgcgtggtcctattggaccactcggagacaagggcgaggccggttatccaggaata ccaggcagaattggatctaaaggagaccggggttaccaaggatcagctggacctatggga ccgccaggacacgacggagaacagggagaacaaggagagccaggtgcaccaggaccagca ggcgaccagggtcttagaggttttatgggaccaaggggaaagcccggccctgttggtgtt ccgggaataccaggagctgaaggtgcaccggggccgaaaggaaaccagggaggtatcgga tccccaggtgctccaggacaagcaggtgccccaggaccagtgggttctcccggaccacca gggccgctcggaccacaaggtattccaggcgcccagggcaaaccgggtcttgcaggttta cccggacccataggaccaccaggtattgatggacttaaaggcacacctggacccaaaggc gacattggaccccttggtctacagggaattattggctatccaggcccaagaggaacaaag ggcgatactggagctagaggactaatgggcgcaaaaggcaatcagggacttactgggttc cctggagatcgtggggactttggacagaaaggggacaaaggatcggtcggagattacggc ccaattggtccagagggaatcgaagggtcaaagggtgatcgtggtccgactggtgaagac ggtccacctggcaatcaaggcgagaagggacgtattggaaccccagggctaccagggtat ccagggccacctggtttaaagggtgacagcggtgggcgtggacgacgtggaaaacgaggg cgcagtggaaaatctggaccaccaggcccagttggtgatcgtggcgatcccggtgcacag ggacaacaaggcgaacgtggtaaaacaggcgcgcctggcccagttggacccaagggagat aatggtgtagcaggacctccggggccagtcggagaacagggaattcaaggaccaccagga atgcagggtcctccagggccacaaggagctaatgggttgccaggaaaggatggactccgt ggtgcaccaggtgaaaggggtgagccgggccagcaaggtcaagtaggtgccacagggcca gcaggtgtaatgggaccaacaggaccacccggggatccaggaccggtaggggaccgggga cctccaggcaatcagggattaccaggagatacaggactcccagggcaggcaggaccacct ggcgaacggggaccacaaggtatagcaggagaccttggaccacccggtcctccaggacca cagggatttgttggggaccgtggatatcctggaccaccaggcagagatggactgccaggg gacgacggtcctgaaggcccgcctggaccacagggtgagaaaggagcagaggggatagcg ggagattcgggaccaccaggaccaatgggaccaccaggaccccctggattcgaaggacgc aggggcacaaagggagatatgggtatagaaggactccctggtgattcaggcgggcaaggc cccgagggacctcgtggacatcaaggaccagctgggccggccggtcctccaggccaggat ggcgataagggtgaacaaggacttccagggccgcgcggacagaagggagaatacggtatt cagggaccaccaggacctcagggaccaccaggattgcagggatctttgggaccaccgggt cacccgggagagcctggtatccaaggcattcaaggaccaccaggaaataagggatccgag ggcccaagaggattagtgggtatgtctggaaaccctggactacagggtccaccaggggcc ccgggtccaaaaggagaacatggcgatagcggtatattaggaccaccaggagcaccaggt ccacaagggccacccggacccactggtggcgttggcgcaccaggtttgcctggaaatcca ggttctgaaggaagaattggaccaaagggagacccaggagatcccggacaacctggacgt gctggccttaacggagttgatggacccccaggacctcctggagcacccggagaagagggt cgaccaggtgtcgcaggagaaccaggcccgagaggcccgcccggtattgatggtcccaaa ggacattctggagagtttggaccaccaggcaatcctggacctcctggtcctaccggacca aagggtgaagctggccttgacggtaacgaaggaaaacaaggatctccaggcccgatggga ccggtaggaattcctggtgaaaacggtctgcaaggtccgactggcaagcaaggaccacag ggcttaccaggtgtccagggatcagcaggagaatccggaccaaagggagaccgaggactt ccgggaccacttggacaacgcggaccaccagggcccccgggtgatcaaggaagagctgga ccgagtggaccacctggatcgcctggtcagaatggtgaagccggaccccctggagcaccg ggaagctccggagaaccaggtgtaattggacctgccggacctatcggcgcaaagggtgaa caaggcatgaagggagctaagggccaccacggacgtgtcggaccgaccggtttgccaggg gatcaaggacctcaaggacaacccggaattccaggacctcccggaccaaaaggagaacgc ggagaaacgggaccaatgggcccaactggacctcccggcgctgatggggccactgggcct acgggtatagaaggtccaatgggaccaaaaggagaacctggacaagacgggccaccagga atcccaggtcctcagggtccacctggtccagccggtcaacctggcggcgcccagccatat ccttctgatctgcttggcggaggaagtgacaacttgttggtggttagaaagaggagaagc gtacaggagcatcctgctattgtcaacctaccagacctagaagctgactttgaagaggct atgattgctatcactgaaaaccaggtaacattaacggaaggagttcatatgtttgtggac aagatgtggaaccacattgtaaaagtatcaaacattgttgatgaactaaaatatccacca ggctcaagagaaagcccggcctcctcttgtaaagacatcaaagtgtcttacgagggctat caagatggtatgtactggattgatcctaaccaaggtggtgtcggtgatgccatcgaagta tggtgtaatatgactggtggtggacaaacatgtgtacaaccgaacgaagagactgatagg gctgaactgagacactggcaaaatggagagtggtttagtgaaatggacggtggatttgag ataacatacaacgagcaaatcaatgcattagcaatgaaatcagatgtagcgacacagatg tttgtgattgactgtgaaggtgcagctgcctggtttgaccaggatctgcaaagtactgaa aatgccatgacattactaggacttaatgaacacttgtttgaaaccgctgaacttaatggc gtaactgttcttcaagatggctgcaaggacaagactaacggtcaaacagtgttccagttg aagacaaagtcatctcgactaccagtgattgactttatgcctaaggactatagcaagtcc aaccagaagttcggtttccgtgcaggagcagtgtgctttctttaa

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