Mercenaria mercenaria (northern quahog): 123566306
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Entry
123566306 CDS
T07835
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03013
Nucleocytoplasmic transport
mmer03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123566306
03015 mRNA surveillance pathway
123566306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123566306
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123566306
5.6.2.5 RNA 5'-3' helicase
123566306
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123566306
mRNA cycle factors
Common to processing body (P body) and stress granule
123566306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
Viral_helicase1
Helicase_RecD
AAA_16
nSTAND3
ATPase
SRP54
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
123566306
NCBI-ProteinID:
XP_045216204
EnsemblRapid:
LOC123566306
LinkDB
All DBs
Position
8:54236192..54272404
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVDAYGPNSQTLTFLDTEEDLLGADTQGSEFDFTDFTLPSQTQSQTQASQIETGQSQSQ
ANEVPVQNGIDGTVTTITQGVGELQFEEEEEEEQFYMKDLPKHACAYCGIHDPACVVHCN
TTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCACRNVFLLGFIP
AKADSVVVLLCRQPCATLSNLKDMNWDPSQWQPLIQDRQFLPWLVKVPSDQDQMRARQIS
AQQINKLEELWKDNPEANLEDLEKPGVDEEPQQVLLRYDDAYQYQSIFGPLVKLEADYDK
KLKESQTQDNIVTRWDVGLNKKRIAYFNLPKANDEMKLMHGDELRLRYMGELHKHWSGVG
HVIKIPDNHSDEIAIELKSNAGVPTECTHNFVVDFVWKSTSFDRMQSALKTFAVDETSVW
GYIYHKLLGHEVEDVVIKCQLPKRFSAPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATVVYHLAKQSNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIESPVAF
LALHNQIRNMDSLPELQKLQQLKDETGELSSTDEKRYRSLKKQCERELLQNADVICCTCV
GAGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAARA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTPAERIRSSLDIP
WPQPDKPMFFYTSSGQEEISSSGTSYLNRTETASVEKIATRFLRSGVKPEQIGIITPYEG
QRAYIVQYMQYSGSLNKKLYIEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRR
LNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQRCLVEGPLNNMKESLIQFSKPRK
LVNSTNPGGRFMSNTMFDAREVLIPGSIYDRSVGYREPVVRTHDQLGFIGPERAYTGPGM
NMPIPVNMFISPMPQPFHPPQQPMQIPANARGRGGGGRGRGMRTKPPRYSQHTPQSQTSQ
LTNSQSQASQDISQPFSQGPLTQGGLSMSQPFQMSQPGLSGLSQPELSQDSFLADDFKSQ
ADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgatgcttacggaccaaattcccaaactctgaccttcctggataccgaggag
gacctccttggtgcagatacacagggttcggaatttgacttcaccgactttacactgccc
tcacaaactcagtctcagacacaggcttctcagattgagactggtcaaagccagagccag
gcaaatgaggttccagtacagaatggcattgacggaacagtcacaacaatcacacagggt
gttggggagctacagtttgaggaagaagaggaggaggaacaattttatatgaaagatcta
cccaaacatgcctgcgcatattgtggtatacatgatccagcatgtgttgtacactgcaat
acaaccaagaagtggttctgtaatggtagaggtaatacttcaggcagtcacatcattaat
catcttgtgagagctaaagccaaggaagttacattacacaaggatggtcctcttggagaa
acagtgcttgaatgttacaactgtgcatgccgtaatgtgttcctgttgggatttatacct
gccaaagcagactctgttgtggtgcttttgtgtagacaaccttgtgccactctgagtaac
ctaaaggacatgaactgggacccatcccagtggcagccattgatccaggatagacagttc
ctgccttggttggtgaaggtaccatcagatcaagatcagatgcgagcccgccagatctct
gcccagcagatcaacaagctagaagagctatggaaagataatccagaggccaacctcgag
gatctggagaaacctggagtagacgaggaacctcagcaggtccttttaagatatgatgat
gcctaccaataccagagtatatttggtccactggtgaagttagaggcagattatgacaag
aagttgaaggagtcacaaacccaggacaatattgtaacaagatgggatgttggacttaac
aagaagagaattgcttacttcaatctacctaaagcaaatgatgagatgaagttaatgcac
ggagatgagctgaggttacgctacatgggagagttgcataaacactggtctggagtgggc
catgtcatcaaaattcctgacaaccatagtgacgagattgccatagagctgaaaagtaat
gctggtgttcctactgaatgtacacacaattttgttgttgattttgtctggaaatctact
tcatttgacagaatgcagtctgccctgaagacgtttgcagtagatgagacttcagtatgg
ggatatatctaccacaagttacttggccatgaagtagaggatgttgttatcaaatgtcag
ctgcctaaacgttttagtgcccccaacctcccggaactcaatcactcccaagtgtatgct
gtcaaaaccgtactgcagagaccgttaagcttgattcagggtcccccaggaactggaaag
actgtgacctcggcaacagttgtataccatctagccaagcaaagtaatggtcaagtgtta
gtgtgtgcaccatctaatatagcagtggatcaacttacagagaaaatacacaaaactgga
ctgaaggtggtgagactgtgtgccaagagtagggaagctatagaatcaccagtggcattc
cttgcactgcataatcagatcagaaatatggacagcttgcctgagttgcagaagttacaa
cagttaaaggacgagactggagaattgtcatcaacagacgagaaacgctacagatctctc
aagaaacagtgtgagagagaactacttcagaatgcagatgtaatttgctgtacgtgtgtt
ggagcaggcgaccctcgtcttgccaagatgcaattccgctcagtgttgattgatgaaagt
acccaggccacagaaccagagtgtatgattccagtagtgcttggatgtagacagttgatc
ctggttggagaccactgccagcttggacctgttgtgatgtgtaagaaggcagccagagct
ggtctatcccagtccctgtttgagagacttgttgtgttggggatcagacctatacgtcta
caggtgcagtaccgtatgcaccctgctctcagtgctttcccatctaacatcttctatgaa
gggtccctgcagaatggggtcactccagcggaaagaattcgtagtagtttggacataccg
tggcctcagccagacaagccaatgttcttctatacatcttctgggcaggaagagatctcc
agctctggaacttcctatctcaacagaactgagactgcctcggtagagaaaatagcaaca
cgtttcctgcgttccggggtgaagccagagcagattggtattatcacaccatacgaggga
cagagggcctacattgtacagtacatgcaatacagtggctcactgaacaagaaactctac
attgaaatagaagttgccagtgttgatgctttccaaggacgagagaaagatttcattatc
ttatcttgtgtcaggtctaatgaacatcagggcattggtttcctcaatgatccaagacgt
ctcaatgtggcacttaccagagctaaatatggtattataattgtgggcaaccctaaggtg
ttatccaagcaaccactgtggaaccatttgttgacctactacaaagagcagagatgtctg
gtggaggggcctctcaacaacatgaaggaaagtctaatacagttcagcaagccaaggaag
cttgtcaactctacaaatcctggtggtcgctttatgagtaacacaatgtttgatgccaga
gaggtgcttatacccggcagtatctatgacagaagtgtaggctacagggagccagtggta
cgtacccatgaccagcttggttttattggacctgagagagcatacactggaccaggaatg
aacatgccgatcccagtgaacatgtttatcagccctatgccacagcccttccatccacca
caacaacccatgcagatacctgcaaatgcacgtggacgtggtggtggaggacgtggacga
ggcatgcgcaccaaaccaccacggtatagtcagcacacaccgcagagtcagacatcacag
ctgaccaacagtcagagccaggctagtcaggacatctcacagccattctcccagggaccg
ctaacacagggtggtctctctatgagccagccgttccagatgagccagccaggcctctct
ggattgtctcagccagaattatcacaggacagtttcctggcggatgacttcaagtcacag
gctgacggcatgttgtcgcaggactcgacataccagggcgaccgcatgttctatgcttca
cagctctcacaaggtcctttcaactaa
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integrated database retrieval system
