Marmota marmota marmota (Alpine marmot): 107145072
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Entry
107145072 CDS
T09644
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03013
Nucleocytoplasmic transport
mmma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107145072 (Upf1)
03015 mRNA surveillance pathway
107145072 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107145072 (Upf1)
Enzymes [BR:
mmma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107145072 (Upf1)
5.6.2.5 RNA 5'-3' helicase
107145072 (Upf1)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107145072 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107145072 (Upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_11
AAA_12
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
ATPase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107145072
NCBI-ProteinID:
XP_048651326
Ensembl:
ENSMMMG00000001874
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
AGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHD
PACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRN
VFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQE
QLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLV
KLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDL
APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTF
AVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLI
QGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSRE
AIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNA
DVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV
MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGSR
LCLGQGLWERSGYKGMWWLEEREPAFQFLPTGLCIATSVNRVLCVRSWQGSSCGQCGGQL
MGQCCPFQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI
IVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMT
TAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPP
MPPPGYFGQANGPAAGRGAPKSKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQ
GALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGG
VTGLSQY
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
gccggacagctcgacgcgcaggttggacctgagggcatcctgcagaatggggctgtggac
gacagtgtggctaagaccagccagctcttggcagagttgaacttcgaagaagatgaagaa
gatacctattacacaaaggaccttcccatccatgcctgcagttactgcggaatacacgat
cctgcttgcgtggtttactgtaataccagcaagaagtggttctgtaacggccgtggaaat
acttctggcagccacattgtaaatcacctcgtgagggcaaaatgcaaagaggtgactctg
cacaaggacgggcccctgggggagacggtcctggagtgttacaactgtggctgtcgcaat
gtcttccttctcggcttcattcccgccaaggccgactcagttgtcgtgctgctgtgcagg
caaccgtgtgcaagccagagcagcctcaaggacatcaactgggacagctcgcagtggcag
cccctgatccaggaccgatgcttcctttcctggctggtcaagatcccctctgagcaggaa
cagcttcgggcccggcagatcacggcccagcagatcaacaagctagaggagctctggaag
gaaaacccttcagccaccttggaggacctggagaagccgggagtggatgaggagccgcag
catgtcctcctgcggtacgaagatgcctaccagtaccagaacatctttggccccctggtc
aagctggaggctgactatgataagaaactgaaagagtcgcagactcaagataacatcacg
gtcaggtgggacctgggccttaacaagaagagaatcgcctacttcactttgcccaagact
gactctgacatgcgactcatgcagggggatgagatatgtctgcggtacaaaggggacctt
gcacccctttggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgag
atcgccattgaactccgtagcagtgtgggagcacccgtggaggtgactcataatttccag
gtggattttgtgtggaagtcaacctcatttgataggatgcagagtgcgctaaaaacattt
gctgtggatgagacctccgtgtcaggctacatctaccacaagttgctcggccatgaggtg
gaggatgtgatcatcaagtgccagctgccgaagcgcttcacagcacaagggctccctgac
ctcaaccactctcaggtttatgccgtgaagactgtattgcagagaccgctgagtctgatc
cagggccctccaggcacagggaagacggtgacatcagccactattgtttaccacctggct
cggcaaggcaatgggcctgtacttgtctgtgctccgagtaacatagctgtggatcaactg
acggagaagatccaccagacagggctgaaagttgtgcgcctctgtgccaagagtcgcgag
gccattgactccccagtgtccttcttggcgctgcacaaccaaatcaggaacatggacagc
atgccagagctgcagaagctacagcagctgaaggatgagacgggggaactctcttctgcg
gacgagaagcggtaccgggccctgaaacgcacggctgagagagagctgctcatgaatgcg
gatgtcatctgctgcacctgtgtgggtgctggtgacccgaggcttgcgaagatgcagttc
cgctccatcttaatcgacgagagcacccaagccactgagccagagtgcatggtgcccgtg
gtccttggagccaagcagctgatcctcgtgggtgaccactgccagctgggcccagtggtg
atgtgcaagaaagcggccaaagccgggctgtcacagtcactctttgagcgcctggtggtg
ctgggaatccgtcccatccgcctgcaagtccaataccggatgcaccccgcacttagtgcc
ttcccatccaacatcttttatgagggctctctccaaaacggcgtcactgcaggtagtagg
ctctgcctggggcaggggctttgggagagaagtggatacaagggaatgtggtggcttgag
gagagggaacctgcctttcagtttctccctacggggctttgcatagccacctctgtcaac
agggtactttgtgtgaggtcttggcagggctcctcatgtgggcagtgtggtggtcagcta
atgggacaatgctgcccctttcaggaggtggagatcgctagtgtggatgccttccaggga
cgtgagaaggacttcatcatcctctcctgcgtgcgggcaaatgagcaccaaggaattggg
tttttaaacgaccccagacgtcttaatgtggctctgaccagagcaaggtacggcgtcatc
atcgtgggcaacccaaaggccctgtcaaagcagccactgtggaaccacctgctcaactac
tacaaggagcagaaggtgctggtggaggggccgctgaacaacctccgggagagcctcatg
cagtttagcaagccccggaagcttgtcaataccatcaacccgggggcccgcttcatgaca
acagccatgtacgatgcccgtgaggccatcatcccaggatcagtctacgaccggagcagc
cagggtcggccctcgaacatgtactttcagacccacgaccagatcggcatgatcagcgct
ggccccagccacgtggctgccatgaacattcctattcccttcaatctggttatgccaccc
atgccgccaccaggctactttggacaagctaatgggccagcggcaggccggggtgccccc
aaaagcaagactggtcgtgggggacgccagaagaatcgcttcgggcttcctggacccagc
cagactaacctccccaacagccaggccagccaggatgtggcctcgcagcctttctcccag
ggagccctgacgcagggctacatctccatgagccagccctcccaaatgagccaacccggt
ctctcccagcccgagctgtcccaggacagttaccttggtgatgagtttaaatcacagatt
gatgtggcgctatctcaagactccacataccagggagaacgggcgtaccagcatggcggg
gtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
