Candidatus Methylospira mobilis: F6R98_16580
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Entry
F6R98_16580 CDS
T06248
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmob
Candidatus Methylospira mobilis
Pathway
mmob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F6R98_16580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmob03400
]
F6R98_16580
Enzymes [BR:
mmob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F6R98_16580
DNA repair and recombination proteins [BR:
mmob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F6R98_16580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFY44048
UniProt:
A0A5Q0BPN7
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All DBs
Position
3657094..3660573
Genome browser
AA seq
1159 aa
AA seq
DB search
MTASRSSHPIINPTLPGQRGDCIAWSGLHGCGDSLAIARAAQKNRQLNIVVTFDMPNLLR
LEHELKFFLDGDFQVLQFPDWEILPYDIFSPLPEIVSHRLKTLALLPDTRQGVLVVTAST
LMQRLAPRTHILANTFTLKRGSRFSIEATRQTLESVGYQCVSQVLEHGEFAVRGAIVDLF
PMGSTLPYRIELFDEEVDSIRSFDPENQRSLDKVEAINLYPAREFPFDATAIKLFRQNWR
EQVSDNTRANTLYQDVSKSILPGGIECYLPLFVSHTETLFDYLPAQTTFIMHGPVLEAAG
AFHEEALHRYQLRKTNLDRPALPVEKLYLDPMLLEQKLSEFQKILIGAAPPDSNIRQQVF
NCPQLPNVTLDTRQKLPLHALNAFRENQADLRLLFIAETAGHREALLDTLHKYDLRPVVM
EGWRAFLESDNKLALVVAPLSNGLWLPDAGMALVTETQLSGEKAQQRRRRKKTHERDLDA
LMRNLEELEIGSPVVHQDHGVGRYLGLQRLTVGGMEGEFLALEYANHDKLYVPVSSLHLI
NRYSGAGEDTAPLHRLGSETWQKAKRKAFERARDVAAELLDIYARRAAMPGHACNCLSDE
YQAFAASFPFEETPDQENAILSVIEDMSAARPMDRVICGDVGFGKTEVAMRAAFIAAQNS
RQVAVLVPTTLLAQQHYQNFRDRFADWPIRIAVLSRFVGGKQQTQLLEELAEGRIDIMIG
THKLLQKDIRFKNLGLAIIDEEHRFGVAQKEHLKKLRSELDFLTLTATPIPRTLNMALGG
LRDISLIATPPANRHAIQTFVHEWSDSLIQEAITREIKRGGQAYFLHNKIETMEKMAREL
GALVPEARIRTAHGQMPERELEQIMLDFYHQRFNLLISTTIIESGIDVPSANTMLINRAD
QLGLAQLHQLRGRVGRSHHRAYAYLIVPPKALISTDAAKRLQAIESSGELGAGFMISTHD
MEIRGCGELLGDEQSGQIQEIGFTLYSELLERAVKALKSGKQPELDAPMDAGPEIDLQSP
ALIPDDYLPDVHTRLVLYKRIASARDAGDLRALQIEMIDRFGLLPPATKTLFAVTELKLT
AEKLGVRKIEAGASGGRMLFGSQANIDPVQVIFLIQNQSRIYRMDGPDKIRFLQAFDTVD
EKIAFLKALCEMLSPKGNG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctcacgctcctcgcaccctattatcaatcctaccttacccggacaaagaggc
gattgcattgcctggagcggtctgcacggctgcggcgactctctcgccatcgccagagcg
gcgcaaaaaaaccggcaactcaatattgtcgtgactttcgacatgccgaacctgctgcgt
ctggagcacgaactcaagttttttctcgacggcgactttcaggtgctgcagtttcccgac
tgggaaattctgccttacgatattttttcgccgctcccggaaatcgtctcgcatcgttta
aaaacactggccttgctgccggatacgcgacagggcgtgctggtggtgaccgcatcgacg
ctgatgcagcggcttgcgccgcgcacgcatattctggccaacaccttcaccttgaagcgc
ggcagccgtttcagtatcgaagcgacgcgccagacactggaaagcgtcggttaccaatgc
gtttctcaagtcctggagcacggcgaatttgcagtgcgcggcgccattgtcgatctgttt
ccgatgggcagcaccctgccctaccgcatcgaattattcgatgaggaagtcgattcgata
cgcagcttcgaccccgaaaatcaacgttcgctggacaaggtcgaagccatcaatctctac
ccggcgcgcgaatttcccttcgatgcaaccgctatcaaattattccggcagaactggcgc
gagcaggtttccgacaacacccgcgctaatacgctgtaccaggatgtcagcaaaagcatc
ctgccggggggcatagaatgctatcttccgttgtttgtaagccataccgaaaccctgttc
gattatctgcctgcgcaaaccacttttataatgcatggcccggtgctggaagcggccggc
gcttttcatgaagaggccctgcaccgataccagctccgcaaaaccaatctcgaccgcccc
gcgctgccggtcgaaaagctttatctcgatcccatgctgctggaacaaaagctcagtgag
tttcagaaaattctgataggcgcggcgcccccggactccaatatccggcaacaggtgttc
aactgcccgcagttgcccaatgtgaccctggatacgcgccagaaacttccgcttcacgcg
ctgaatgccttccgggaaaatcaggccgacctgcgcctgctgtttattgcagaaacggcg
gggcatcgcgaagcattgctggacaccctgcacaaatacgatctgcgccccgtcgtaatg
gaaggctggcgcgcttttctggaaagcgacaacaaactcgctctggtagtcgcgccgctg
agcaacggtttgtggctgcccgatgccggaatggcgctggttaccgagacgcaactttcc
ggtgaaaaggcccagcagcggcgacggcgtaaaaaaacccatgaacgcgatcttgacgcg
ctgatgcgcaacctggaagaattggaaataggttctccggtggtgcatcaggatcatgga
gtgggacgctacctggggttgcaacggcttacggtcggaggcatggaaggagaattcctc
gcgctcgaatacgccaatcacgacaagctttacgtgccggtttcgtcgctgcatttgatc
aaccgctacagcggcgccggcgaagataccgcgccgctgcaccgtctgggcagcgaaacc
tggcaaaaagccaagcgcaaggcattcgagcgcgcgcgcgacgtcgcggcggaactgctg
gatatttatgcgcgccgcgcggcgatgccaggtcatgcctgtaactgtctcagcgacgag
tatcaggcgttcgccgccagtttcccgttcgaggaaacgccggaccaggaaaatgcgatt
ctgagcgttatcgaagatatgagcgcggcgcgcccgatggatcgcgtcatttgcggcgat
gtcggcttcggcaaaaccgaagtggcgatgcgggccgcctttatcgccgcccagaacagc
cgtcaggtcgcggtactggtgccaaccacgctcctcgcccagcagcattaccagaatttc
cgcgaccgcttcgccgattggccgatacgtatcgccgtgctgtcgcgctttgtcggaggc
aagcagcagacgcagctgctcgaagagctggcggaagggcgcatcgatatcatgatcggc
acccacaaactactgcagaaagacattcgcttcaaaaatctgggactcgccatcatcgac
gaagagcaccgcttcggcgtcgcacagaaagagcatcttaaaaaattgcgcagcgaactg
gacttcctgaccctcaccgcgacaccgattccccgcacgctgaatatggctttgggcggc
ttgcgcgacatttccctgatcgcaacgccacccgccaaccgccatgcgatccaaactttc
gtgcatgaatggagcgacagcctgatacaggaagcgattacgcgcgaaatcaagcgcggt
ggtcaggcttattttctgcacaataaaatcgagaccatggaaaaaatggcgcgcgaactg
ggcgcgctggtgccggaagcgcgcattcgcaccgcccacgggcagatgccggaacgcgag
ctggaacaaatcatgctggatttttatcatcagcgcttcaatctactgatttcaaccacg
atcatcgaaagcggcatcgacgtgccgagcgccaacaccatgctgatcaaccgcgccgat
cagctcggcctggcgcaactgcatcagctgcgcgggcgcgtcggccgctcgcatcaccgc
gcctacgcctacctgatcgtgccgcccaaagccttgatttctaccgatgccgcaaaacgg
ctgcaggcgatagaaagctcaggcgaactgggcgcgggcttcatgatttcgacgcacgac
atggaaatacgcggctgcggcgagttgctgggcgacgagcaaagcggacaaattcaggaa
atcggcttcacgctgtattcggagctgctggagcgcgcggtcaaggcgctcaagtccggc
aagcagcccgagctggacgcgccgatggacgcaggcccggaaatcgatctgcaatcgccc
gctttaatcccggacgattacctgccggacgtgcatacgcgcctggtattgtataagcgc
atcgccagtgcccgcgacgccggcgacctgcgcgcgctgcaaatcgaaatgatagatcgt
ttcggcctgctgccgccggcgaccaaaacgctgtttgcggtaacggagttaaaactgacg
gctgaaaaactgggcgtgcgtaaaatagaagccggagcgagcggcggacgcatgctgttc
ggaagccaggccaacatcgacccggtacaagttatttttctgatccagaatcaatccaga
atctaccgcatggacggcccggataaaatccgtttcctgcaggcgttcgatacggtcgac
gaaaaaatcgcatttctgaaagccttgtgtgaaatgctgtcgccaaaaggcaatggctga
DBGET
integrated database retrieval system
