Mycolicibacterium moriokaense: MMOR_15940
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Entry
MMOR_15940 CDS
T06887
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmor
Mycolicibacterium moriokaense
Pathway
mmor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MMOR_15940 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmor03400
]
MMOR_15940 (ligD_2)
Enzymes [BR:
mmor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MMOR_15940 (ligD_2)
DNA repair and recombination proteins [BR:
mmor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MMOR_15940 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Thr_synth_N
Big_4
Motif
Other DBs
NCBI-ProteinID:
BBX00658
LinkDB
All DBs
Position
1596185..1598476
Genome browser
AA seq
763 aa
AA seq
DB search
MVDQFGRVKLTNPDKVLYPATGTTKAEVFDYYINVASAMLPHIAGRAVTRKRWPNGVNEA
SFFEKQLASSAPDWLERGSIAHKSGTTTYPIINTAEGLAWIAQQAALEVHVPQWRFVSTW
TRSEGAELTPGPATRVVFDLDPGEGVTFRQLCEVAHEVRELIAGIGLTTYPLTSGSKGLH
LYVPLEKPISSRGASVLARRIAVQLEKTMPKRVTATMTKSVRTGKVFVDWSQNNGNKTTI
APYSLRGRDEPTVAAPRTWDEIEDPDLRHLRFDEVLERVERDGDLLAEMDADAPVADALT
TYRSMRDPGKTPEPVPSTAPTVGNDDFFVIQEHHARRLHYDFRLERNGVLVSWAVPKNLP
DTPSVNHLAVHTEDHPLEYGTFEGEIPKGEYGGGKVIIWDTGTYEAEKFRDHGPDGPAKG
GEVIVTLHGKKIDGRYALIQTDGKNWLAHRMKEQQNPRASDLAPMLSTDGSVSRLKATQW
AFEGKWDGYRVLVDANHGRLNVRSRNGRDVTDEYPQFAALAADLADHQVILDGEAVALDE
RGVPSFSEMQNRKRSTRVEFWAFDILYLDGRSLLKAKYSDRRRLLEALAEGGGLIVPDLL
PGDGPEALEHARERGWEGVVAKKLDSTYQPGRRSSSWIKDKIWNTQEVVIGGWRKGEGGR
SSGIGALLLGIPAEGGLQFVGRVGTGFTEKELTKLKGILKPLETEESPFNERLSKPDSRG
VTFVRPELVGEVRYSERTSDGRLRQSSWRGLRPDKDPSEVVWE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatcagttcggtcgggtgaagctgaccaaccccgacaaggtgctttatcccgcg
acgggcaccaccaaggccgaggtgttcgactactacatcaacgtggccagcgcgatgctg
ccgcacatcgcaggccgggccgtcactcgcaaacgttggcccaacggcgtgaacgaggcc
tcattcttcgaaaaacagctcgcgtcctcggcgccggactggctcgagcggggttcgatc
gcccacaagtcgggcaccaccacgtacccgatcatcaacaccgccgaggggctggcatgg
atcgcgcagcaggccgcgctggaagtgcacgtgccgcagtggcgattcgtcagcacctgg
accagatctgaaggcgccgaactgacgccggggcccgccacccgggtggtgttcgacctc
gaccccggcgaaggcgtcacgtttcgccaactgtgcgaggtggcccacgaagtccgcgaa
ctcatcgccggcatcgggctcaccacctatccgttgaccagtggcagcaagggattacat
ctctatgtgccgctggagaagccgatcagctcacgcggggcttcggtgcttgcccgccga
atcgcggtgcagctcgagaagaccatgcccaagcgggtgacggcgacgatgaccaagagc
gttcgcaccggcaaggtgttcgtcgactggagccagaacaacggcaacaagacgacgatc
gcgccgtactcgctgcgaggccgcgacgagccgaccgttgccgcgccgcgcacctgggac
gagatcgaagatcccgatctacgacacctgcgcttcgacgaggtgctcgagcgggtcgag
cgcgacggtgacctgcttgccgagatggacgccgacgcgccggtggccgacgcgctcacc
acttaccggagcatgcgcgatcccgggaagacaccggagccggtccccagcaccgcgccg
accgtgggtaacgacgacttcttcgtcatccaggaacaccacgcccggcggttgcactac
gacttccggctcgagcgcaacggggtactcgtcagctgggccgtgccgaagaacctgccc
gacaccccgtcggtcaaccacctggccgtgcacaccgaggaccacccgttggagtacggc
actttcgagggcgagatacccaagggcgagtacggcggcggcaaggtgatcatctgggac
accggcacatacgaggccgagaagttccgcgaccacggcccggacggcccggcgaagggc
ggcgaggtcatcgtcacgctgcacgggaagaagatcgacggccggtacgcgttgattcag
accgacggcaagaactggctggcgcaccggatgaaggagcaacagaacccgcgggcaagc
gatctggcaccgatgctgtcgacggacgggtcggtgtcgcggctgaaagccacgcagtgg
gcgttcgagggtaagtgggacggttaccgggtgctggtcgacgccaaccacggccggctc
aacgtgcgctcccgcaacggccgcgacgtcaccgacgagtatccgcaattcgccgcgctc
gcagccgatctcgccgaccaccaagtgattctcgacggcgaggcggtggccctcgacgag
cgcggggtgccgagcttctcggagatgcagaaccgcaagcgatccacccgggtggagttc
tgggcgttcgacatcctttatctcgacgggcgatcccttctcaaggccaagtactccgac
cgccgccggctgttggaggcgctcgccgagggcggcggcctgatcgttccggatctgttg
cccggtgacggtcccgaggcgttagagcacgcgcgcgagcgcggttgggagggcgtggtc
gcgaagaagctggattcgacgtaccagccgggccgtcggtcgtcgtcgtggatcaaggac
aagatctggaacacccaagaggtggtgatcggcggctggcggaaaggggaaggcgggcgg
tcgagcggtatcggggccttgctgctcggtatccccgcagaaggcggtctgcagttcgtc
ggtcgcgtcggtacgggcttcacggagaaggagttgacgaagctcaagggcatcctgaaa
ccattggagaccgaggagtcgccgttcaacgaacgcctttccaagcccgattcgcgcggt
gtcacctttgtccggcccgagttggtgggcgaggtgcgttacagcgaacggacatccgac
ggcaggctgcgccaatcgagttggcgtggcctgcgcccggacaaggatccctccgaggtc
gtttgggaatag
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