Methylomonas methanica: Metme_1818
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Entry
Metme_1818 CDS
T01511
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Metme_1818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmt03400
]
Metme_1818
Enzymes [BR:
mmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Metme_1818
DNA repair and recombination proteins [BR:
mmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Metme_1818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AEG00235
UniProt:
G0A3D6
LinkDB
All DBs
Position
complement(1988163..1991609)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSSSTFTQAALPQSIDTPLYWTGLKGCGDSLTLANTINRENRLLVIVTQDTQTALRLEHE
LAFFLNNDLPILHFPDWETLPYDVFSPLPEIISERLRTLAVLPDTKRGALILSVSTLMHR
LAPREHILAHSFAIEVGGTLNLELTRAKLEAVGYQCVSQIYQHGEFAVRGSILDLFPMGS
KQPYRIELFDDDVESIRSFDPDTQMSQEKMQKIELFPAREFPFTDEAVKQFRQAFREQFP
ESSPKNPLYVDISKQIAPAGIEYYLPLFVDHTESLFAYLPKTALFVLPAGFAEHAQRFFS
EAEERYQQRKYDIDRPLLPPARLFLSAEETQQHTVRFSRIVLDNQAEQGHSLNCKSLPDL
AIDSRLKEPAQNLRRFIEGFAGKILFVAETAGHREGLIDKLKSVKLQVKPLQSWPEFLQS
DESACIVVAPMDQGLWLDTPSLAIITESQLSGAKAQQRRRRRQSAARELENIFNNLNELT
IGSPVVHQEHGVGRYLGLQTLTVGDIEAEFLMLEYANNDKLYVPVSSLHLIGRYSGISAE
NAPLHKLGTEQWSKAKKKAMERARDVAAELLDIHAKRAARQGFAFDVDNTDYNAFAAAFP
FEETPDQLSAIDAILHDMAATQPMDRVVCGDVGFGKTEVAMRAAFVAVQSGKQVAVLVPT
TLLAQQHYQNFRDRFADWPVRIEVMSRFVTAKQQKAVTDELAAGKVDIIIGTHKLLSKDM
KYQALGLVIIDEEHRFGVTQKEHFKKLRYELDMLTLTATPIPRTLNMAMAGLRDISIIAT
PPPNRHAIKTFVTEWIDSQVQEACQREIKRGGQVFFLHNDVKTMDKMARELETLVPEARI
QIAHGQMAERELEQIMLDFYHQRFNLLIASTIIESGIDIPSANTIVINRADKLGLAQLHQ
LRGRVGRSHHRAYAYCIVPPKSLMTKDAIKRLEAFETSGELGAGFMLSSHDMEIRGAGEL
LGDEQSGQIQEIGFTLYTELLERAVDALKSGKQPELDAPFDSGPEVDLQTAALIPEDYLP
DIHARLVLYKRIASADSEDDLRKLKIEMIDRFGLLPDQVKALFAITELKQQSAHLGIKKI
EAYATGGRIVFNASPQIDTAELIAMIQSQSQVYKFDGADKLRFTHTFKDMEDKVAFLHKL
LLRLGPKP
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcaacctttacccaagccgctcttccccaatccatcgacaccccactttat
tggaccggccttaaaggctgcggcgactccctgacgctagccaacaccattaatcgggaa
aaccgtttactggtcatcgttactcaagacacccaaaccgccttacgcttggaacacgag
ctggctttttttctaaataacgacctaccgattctgcatttcccggattgggagaccctg
ccctacgatgtattctcgccgctcccggaaatcatttcggaacgcttgagaacactggca
gtgctgccggacaccaaacgcggcgcgctgatcctgtcggtatccaccttgatgcaccga
ctggcgccgcgcgaacacatattggcgcacagctttgcgatagaagttggcggcaccctg
aacctcgaactgacccgcgccaaactggaagcggtcggttatcaatgcgtgtcgcaaatc
tatcaacatggcgaattcgccgtgcgcggctcgattctggatttattcccgatgggcagt
aaacaaccctaccgcattgaactattcgacgacgacgtggaatcgatccgcagcttcgac
ccggatacgcaaatgtctcaggaaaaaatgcaaaagatcgagctgtttccagcccgcgag
tttccatttaccgacgaagccgtcaaacagtttcggcaggcttttcgcgaacaattcccc
gaatcgtcacccaagaatccgttatacgtcgatatttccaaacaaatcgccccggccggc
atcgaatactatctgccgctattcgtcgaccataccgaatccttgttcgcctatctgccg
aaaaccgctctgttcgtgttgccggccggctttgccgagcacgcccaacgctttttcagc
gaagccgaagaacgctatcagcaacgtaaatacgatatcgaccggccgctgttaccgccc
gccaggctgtttctatcagccgaggaaactcaacagcacaccgtccgcttcagccgcatc
gttctcgacaatcaggcagaacaaggccattcgcttaattgcaaaagcctgcccgacctc
gctatcgacagccgcttgaaagaacccgcgcaaaacctgcgtcgattcatcgaaggcttt
gccggaaagatcctgtttgttgccgaaaccgccggccaccgcgaaggcctgatcgacaag
ctgaaaagcgttaaactgcaggtcaaaccgttgcaaagttggccggaatttctacaaagc
gacgagtccgcctgtatcgtggttgcgccgatggaccaggggctgtggctggatacgccc
tcgctggccatcatcaccgaaagccaactcagcggcgccaaggcccaacagcggcggaga
cgccggcaatcggccgcccgcgagctggaaaacatcttcaacaacctcaacgagctgacc
atcggttcgccagtggttcatcaggaacacggcgtaggccgctatctgggcctgcagacc
ttgacggtgggcgatattgaagccgaatttctgatgttggagtatgccaacaacgacaaa
ctgtacgtgccggtctcctcgctgcatttaatcggccggtatagcggcatctccgccgaa
aatgccccattgcataaacttggcaccgaacaatggagcaaagccaagaaaaaggccatg
gagcgggcccgcgatgtggccgccgagctgctggatattcacgccaaacgcgccgcccgt
cagggctttgcctttgacgtcgacaacaccgactataacgcttttgccgctgccttcccg
ttcgaggaaacgccggaccagcttagcgccatcgacgccatcctgcacgatatggccgcc
actcagccgatggatcgcgtggtctgcggcgacgtaggcttcggcaagacagaagtcgcc
atgcgcgccgccttcgtcgcggtgcaaagcggcaagcaagtggcggtgctggtgcccacc
actttattggcccaacaacattatcaaaatttccgcgaccgtttcgcagactggccggta
cgcatcgaagtgatgtcccgcttcgtcaccgccaaacaacaaaaagccgtgaccgacgaa
ctggcggcgggcaaagtcgacatcattatcggcacccacaaattactgtccaaagacatg
aagtatcaagccttggggctggtcatcatcgacgaggaacaccgtttcggcgtgacccaa
aaagagcatttcaagaagttgcgatatgaactggatatgctgacgctgaccgcgacaccg
ataccgcgcaccctgaacatggccatggccggcctgcgcgacatctccatcatcgccacc
ccgccgcctaaccgccacgccattaaaaccttcgtcacggagtggatagattcgcaagta
caagaggcctgccaacgggaaatcaagcgcggcggccaagtgttttttctgcacaacgac
gtaaaaaccatggataagatggcccgcgaactggaaacgctggtgccggaagcccgcatt
cagatcgcccacggccaaatggcggagcgggaattggaacagatcatgctggatttttac
caccagcgtttcaacctgttgatcgccagcaccattatcgaaagcggtatcgatatcccc
agcgccaataccatcgtcatcaaccgcgccgacaagttgggtctggcacaattgcaccag
ctacgcggccgggttggccggtctcaccatcgcgcctacgcctattgcatcgtgccgccc
aagtcgctgatgaccaaggacgccatcaaacgcctggaagccttcgaaacctccggcgaa
ctgggtgccggtttcatgttgtcttcgcacgacatggaaatacgcggggccggcgaactg
ttgggcgacgaacaaagcggccagattcaggaaatcggcttcaccctgtacaccgaattg
ctggaacgcgctgtcgacgccctgaaatccggcaaacaaccggaactcgatgcaccgttc
gattctggacccgaggtcgacttgcaaaccgcggcccttatcccggaagactatctgccg
gatatccatgcccgtctggtgctatacaaacgcatcgccagcgccgacagcgaagacgac
ttgcgcaaactcaagatagaaatgatagaccgcttcggtttgttgccggatcaggtcaag
gccctgtttgccatcaccgaattgaaacaacaatccgctcacctgggcatcaaaaaaatc
gaagcctatgccaccggcggcagaattgtatttaatgcctcgccgcagatcgacacggcc
gaattgatcgcgatgatccaaagccaatcgcaagtctataagttcgatggcgcggataag
ttacgctttacccacacctttaaagacatggaagacaaagtggcgtttttgcataaatta
ttgctgagactgggaccaaaaccgtag
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integrated database retrieval system
