Methylomonas methanica: Metme_3823
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Entry
Metme_3823 CDS
T01511
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Metme_3823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmt03021
]
Metme_3823
03400 DNA repair and recombination proteins [BR:
mmt03400
]
Metme_3823
Enzymes [BR:
mmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Metme_3823
Transcription machinery [BR:
mmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Metme_3823
DNA repair and recombination proteins [BR:
mmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Metme_3823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Peptidase_M23
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AEG02178
UniProt:
F9ZXM3
LinkDB
All DBs
Position
complement(4235986..4240062)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRNNFGKGSEVLEVPYLLATQIDSYASFLQSGMQPEKRRSQGLHAAFSSV
FPVVSHSGYAVLEYVKYRLGEPAFDVRECQQRGATYSAPLRVLVRLVIYDKDAPANTKVV
KDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFNA
RVIPYRGSWLDFEFDHKDAVYVRIDRRRKIPATILLRALGYDNEEMINIFFETNKFSLDA
DKFMFHVIPDRLRGEMAVFDIKHDGAVLIEEGRRITAKHIRQLEKAGVTEIEVPRDYLYG
KILGHNVIDKSTGELIANVNDEITEPLLQKLIEANVSELNTLYVNDLDRGPYISNAMRLD
TTTNRLEALVEIYRMMRPGEPPTVESAENLFENLFFTDERYDLSAVGRMKFNRRLGREEI
EGTGTLSKEDIIDVLKELIKIRNGNGVVDDIDHLGNRRVRSVGEMIENQFRIGLVRVERA
VRERLTLADSEGLMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRKV
INGQVTDQVDYISAIEEGEFVIAQASVAVDENGKLVEGLVSCRHKDEFTLASSDTVQYMD
VSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERVVAKDSGV
AVVATRGGTIEAVDAGRIVVRANDDETIPGVPGVDIYNLIKYTRSNQNTCINQRPLVKLG
DIVTKGDILADGPSTDLGELALGQNMLIAFMPWNGYNFEDSILVSERVVKEDRFTTIHIE
EKTCVARETKHSPEEITADIPNVSEEALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKAADVKDTSLRVPNNVRGTVIDVQVFTRDGVKKDKRAIEIEEAEIK
RYRKDLDDQLKIVEHDIFARVKTLLIGKKAEKGPNGLKKGEEITVAYLDGLTHSELLKIR
TQDEDANVQLESVLEQIEQQRKEFDERFETKKKKITMGDDLAPGVLKMVKVYLAVKKRIQ
PGDKMAGRHGNKGVISQIVPIEDMPYTADGNPVDILLNPLGVPSRMNVGQVLETHLGWAA
KGLGIKIGKMLEMQAKVNEIREFLEKIYNCSGRKEDLASFSDKEILELALNLVGGVPMAT
PVFDGASEEDIRTMLRLADLPEHGQTVLYDGLTGEPFEREVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTRM
YKNIVDGNHTMEAGMPESFNVLIKEIRSLAVNIEMGQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttttaccgaaaaaaagcgtatccgtaataattttggaaaaggttctgaa
gtactggaagttccttatcttttagcaacacaaattgattcgtatgcaagtttcctgcaa
tcggggatgcagcccgaaaaaaggcgcagtcaaggcttgcatgccgcattttcaagcgta
tttccagtggtcagccactcgggttatgcggtacttgagtatgtgaaatatcgcttgggg
gaacccgctttcgatgtaagagagtgtcagcagcgtggcgccacttattccgctccgctt
agagtgctggtgcggttggtgatttatgacaaggatgcaccggcaaacaccaaagtcgta
aaagatatacgcgaacaggaagtctacatgggggaattgcccctgatgacagacaacggc
acatttgtaatcaatggcaccgagcgcgttattgtttcgcaattgcatcgctcgccaggc
gtcttcttcgaccacgacaagggcaagactcattcctcgggtaagctgttattcaatgca
cgcgtgattccttaccgcggctcgtggctggattttgagttcgaccataaagatgccgtg
tatgtgcgtatcgacagacgtcggaaaatccccgcgacaattttgttgcgcgctttggga
tatgacaatgaagaaatgatcaatattttcttcgaaaccaacaaattttcgttggatgcc
gataagttcatgttccacgtaattcctgacagattacgtggcgaaatggcggtattcgac
atcaaacatgacggggctgttcttatcgaagaaggtcgccgtattaccgctaaacacatc
cgtcagttggaaaaagccggcgttacggaaattgaagtgcctagagattatctctacgga
aaaattttgggacacaatgtcatcgacaagtcgacaggcgaattaattgccaatgtcaat
gatgaaatcaccgagccgctgttacaaaaattaatcgaggctaacgtcagcgaactcaat
acgctgtacgtaaatgatttggatcgtggtccctacatttccaatgccatgcgcctggat
accaccacgaatcgcctggaagctctggtggaaatctatcgcatgatgcgtcccggcgag
ccgccgacggtggaatcggcggaaaacctgtttgaaaacttattctttaccgacgagcgt
tacgatttgtccgccgtaggccggatgaaattcaatcgccgtttgggccgcgaagaaatt
gaaggtaccggcaccttgagcaaggaagacatcattgatgtcttgaaggaactgatcaag
attagaaacggtaatggcgttgtagacgatatcgaccatttaggcaacagacgggttaga
tcggttggcgaaatgatcgaaaaccaattccgcatcggcttggttagagtggaacgtgcc
gttagggagcgtttgacactggctgactcggaaggcttgatgccgcaagagatcattaat
gcgaaacctgtttccgccgctgtcaaggaattctttggttccagccaattgtcgcagttt
atggatcaaaacaatccgctgtcgcaggtcacccataaacgccgcgtatcggctttgggc
ccgggcggtttggcgcgcgaacgcgcgggattcgaggtgcgtgacgtacacaccacccat
tacggccgggtatgtccgattgagacgcctgaggggccgaatatcggtttgatcaattct
ttgtctgtctatgccaggactaatgaatatggttttctggaaacaccataccgtaaggtg
atcaatggtcaagtaacggatcaagtggattatatatccgcgattgaggaaggcgagttc
gttatcgctcaggccagtgtggccgtcgacgaaaacggcaaattggtcgaaggtttggtg
tcctgtcggcacaaagacgagtttaccttggcgtcgtcggataccgtgcagtacatggac
gtgtcttccaagcagatcgtatctgtggcggcttccatcattccgttccttgaacatgat
gacgcgaaccgagccttgatgggatcgaacatgcaacgtcaagccgtacctactttacgg
gcggaaaaaccgctggtgggaacaggcatggagcgggttgttgctaaagattccggtgtg
gcggttgttgcgactcgcggcggtacgatcgaagccgttgatgcgggccgtattgtggtc
agggcaaacgacgacgaaaccattccaggggtgcccggagtggacatttacaatctgatt
aaatatacccgttccaaccaaaacacctgtatcaaccaaagacccttggtcaaattgggc
gatatagttaccaagggcgatattttggccgatggtccgtccactgatctcggtgagttg
gccttgggtcaaaatatgttgatcgcctttatgccgtggaatggttataacttcgaagat
tcgattttggtgtccgagcgggttgtgaaagaagacagatttaccaccatacatattgaa
gaaaaaacctgtgtggctcgggaaactaaacacagtccggaagaaattaccgccgatatt
ccgaacgtcagtgaagaagcgctttccaaactggatgaatcgggcattgtttatgtcggc
gccgaagtaaaaggcggcgatatcctggtgggtaaggtgacgccgaaaggtgaaactcaa
ctgacaccggaggaaaaactgctgcgggcgattttcggcgaaaaagcggctgatgtaaaa
gacacctcgttgcgcgtaccgaacaacgttagagggacggttattgacgtccaagtcttt
actcgcgatggtgttaagaaggacaaacgtgcgatagagattgaagaggctgaaatcaaa
cgttaccgtaaagacttggacgaccagttaaaaatcgtcgaacacgatatctttgctagg
gtaaaaaccttgttgatcggtaaaaaagccgaaaaaggtccgaacggtttgaaaaaaggc
gaagaaatcacggttgcctatctggatggtctgacacattccgagttactcaagatcaga
acccaggatgaagacgcaaatgtgcaattggaatctgttctagaacagatcgaacagcag
cgtaaagagtttgacgagcgttttgaaaccaaaaagaaaaaaatcaccatgggtgatgat
ttggctcccggcgtgttgaaaatggtcaaggtgtatctggctgttaaaaaacgtattcag
cccggtgacaaaatggcgggccgccatggtaacaagggtgttatctcgcaaatcgtacca
attgaagatatgccttacactgccgacggtaatcctgtcgatattttgttgaatccacta
ggcgtaccttcccggatgaacgtcggtcaggtgttggaaacgcatctcggttgggccgcg
aaaggcttgggtatcaagatcggtaaaatgctggaaatgcaggctaaggttaatgagatt
cgcgagtttctggaaaaaatttacaactgtagcggcaggaaagaagatctggcctctttt
tccgataaagagattcttgagttggcgttgaatttggtcggcggcgtgccgatggcgacc
cctgtatttgatggcgcatctgaagaagatattcggaccatgttgcgtctggccgatttg
ccggaacatggtcaaaccgtattgtacgatggcttgacaggtgaacctttcgagcgcgaa
gtgacggtcggttatatgtacatgctgaaattgaaccacttggtggatgacaaaatgcat
gcgcgctcaacgggtccttacagcttggttactcagcaaccgttgggcggtaaagcgcaa
ttcggcggccaacgtttcggtgagatggaggtatgggcgttggaagcttatggcgcagcc
tatacattgcaagaaatgctgactgttaagtcggacgatgtgacaggtagaacccgtatg
tataaaaacattgtcgatggtaatcacacaatggaagccggtatgccggaatccttcaac
gtattaattaaggaaatacgttcgttagcagtcaatatcgaaatggggcaggactag
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integrated database retrieval system
