Mycolicibacterium mucogenicum: C1S78_004170
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Entry
C1S78_004170 CDS
T07324
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmuc
Mycolicibacterium mucogenicum
Pathway
mmuc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1S78_004170 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmuc03400
]
C1S78_004170 (ligD)
Enzymes [BR:
mmuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1S78_004170 (ligD)
DNA repair and recombination proteins [BR:
mmuc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1S78_004170 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPG70216
UniProt:
A0A8H2PER5
LinkDB
All DBs
Position
854272..856512
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AA seq
746 aa
AA seq
DB search
MEQFGRVRLTNPDKVLYPATGTTKADVFDYYLAVAGAMLPHIAGRPVTRKRWPNGVAQQP
FFEKQLASSAPEWLDRGAITHRSGTTVYPIIDTPEGLAWIAQQASLEVHVPQWRFVGAGG
GPRDVPAPGPATRIVFDLDPGDGVTMAQLCEVARAVRELVAGMDLEAHPVTSGSKGLHLY
VPLAAPVSSRGASAVAKRVAQQLESSMGGLVTATMTRSLRAGKVFLDWSQNSSAKTTVSP
YSLRGRDEPTVAAPRTWEELDDPELRQLRFDEVLARLARDGDLLADMDGDAPVADRLTTY
RSMRDPGRTPEPVPAARPASGLNNRFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDT
STINHLAVHTEDHPLEYATFEGDIPKGEYGGGHVTIWDSGTYDTEKFRDSGENGEVIVNL
HGSRVSGRYVLIQTEGKNWLVRRMKEQRLQPMLATHGSVDRLSPDHWAFEGKWDGYRLLV
DADHGRIRLTARSGRDVTGEFPQLQSVAADLADHHVILDGEVVALQDGVPSFQAMQNRGS
GSHIEFWCFDILSLDGRDLTRAKYRDRRKLLETLASDGALTVPPLLPAESPLKFADERGF
EGVVAKKWDSGYRPGRSEAWVKDKFWRTQEVVIGGWRAGEGGRTSGIGALLVGVPEGDGL
QFVGRVGTGFTDKMLADLKAMLKPLETRESPFTAPLSTLDAKGVTYVRPELVGEVRYSER
TSDNRLRQPSWRGLRPDKTPGEVTWE
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
gtggagcaattcgggcgggtgcggctgaccaaccccgacaaggtgctctacccggcgacc
ggcaccaccaaggccgacgttttcgactattacctcgccgtcgcgggcgcgatgttgccg
cacatcgcgggccgtcccgtgacgcgcaagcggtggcccaatggtgttgcgcagcagccg
ttcttcgagaagcagctggcctcgtcggcgccggagtggctggaccgcggtgccatcaca
catcgcagcgggaccaccgtctacccgatcatcgacacccccgaggggctcgcctggatc
gcccagcaggcgtcgttggaagtgcatgtgccgcaatggcgcttcgtcggtgcgggcggc
gggccgcgcgatgtccccgctccgggacccgcgacacgcatcgtgttcgacctggatccc
ggcgacggcgtcaccatggcgcagctgtgcgaggtggcgcgcgctgtccgcgaactcgtc
gccggcatggacctggaggcccatccggtgaccagcggcagcaagggtctgcatctctat
gtgccgctggccgcgcccgtcagctcccgcggtgcgtcggctgtggccaaacgtgttgcc
cagcaactcgaatcatcgatgggcgggctggtcaccgcgaccatgacccgcagtctgcgg
gccggcaaggtgttcctggactggagccagaactcctccgccaagacgacggtgtcaccg
tattccttgagaggccgcgacgagccgacggtggccgcgccgcgcacctgggaagaactc
gacgatccggagttgcgccagctgcggttcgacgaggtgctggcccggctggcccgcgac
ggtgacctgctcgccgacatggatggcgacgcgccggtggccgatcggctcaccacctac
cgcagcatgcgggaccctggccggacgccggagccggtgccggcggcccggcccgcgtcg
gggctcaacaaccgcttcgtcatccaggagcatcacgcccgccggttgcactacgacttc
cggctggaacgcgacggcgtgctggtcagttgggctgtcccgaaaaaccttccggacacc
tcgaccatcaaccatctggcggtgcacaccgaagaccacccgctggaatacgccaccttc
gaaggcgacatccccaagggcgaatacggcggcgggcacgtcacgatctgggactcgggc
acctacgacaccgaaaagttccgggactcaggcgaaaacggcgaggtgatcgtcaacctc
cacggcagccgggtttccgggcggtacgtgctgatccagaccgaaggcaagaactggctg
gtgcgccggatgaaagagcaacggctgcaacccatgctggccacccacggctcggtggat
cgactgtctccggaccactgggcattcgagggaaagtgggacggctatcggctgctggtc
gacgccgaccacggccgaatccggctgaccgcccgcagcggccgcgacgtcacgggggag
tttccgcaattgcagtcggtggcagccgatctcgccgatcaccacgtgatcctggacggc
gaggtggtggccttacaggacggcgtacccagttttcaggccatgcagaaccgcggctcc
ggcagtcacatcgaattctggtgcttcgacatcctgtccctcgacggacgcgacctgact
cgcgcaaagtatcgggatcggcgaaagctgttggaaaccctggcctctgacggtgcgctg
acggtgccgccgctgttgcccgcggagagccccctgaagttcgcggacgagcgcggcttc
gaaggggtggtcgcgaagaagtgggattccggataccggcccgggcggtcggaggcctgg
gtgaaggacaagttctggcgcacacaggaagtggtgatcggcggctggcgtgccggggag
ggcggccgcaccagcggcatcggggcgctgctggtcggggttcccgagggcgacggccta
cagttcgtcggccgcgtgggtaccgggttcaccgacaagatgctggctgatctgaaggcg
atgctcaagccgctcgagacccgcgaatcgccttttaccgcaccgctttccacgctcgat
gccaaaggcgtgacgtacgtgcggcccgagctcgtgggtgaggtgcgctacagcgagcgc
acgtccgacaaccgcctgcgccagcccagttggcgtggcctccgcccggacaagacgccg
ggggaggtcacctgggagtga
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