Microcebus murinus (gray mouse lemur): 105877295
Help
Entry
105877295 CDS
T07238
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mmur
Microcebus murinus (gray mouse lemur)
Pathway
mmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105877295 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmur03019
]
105877295 (SKIV2L2)
03041 Spliceosome [BR:
mmur03041
]
105877295 (SKIV2L2)
03009 Ribosome biogenesis [BR:
mmur03009
]
105877295 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
mmur03016
]
105877295 (SKIV2L2)
Enzymes [BR:
mmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105877295 (SKIV2L2)
Messenger RNA biogenesis [BR:
mmur03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105877295 (SKIV2L2)
Spliceosome [BR:
mmur03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105877295 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
105877295 (SKIV2L2)
Ribosome biogenesis [BR:
mmur03009
]
Eukaryotic type
Pre-60S particles
Helicases
105877295 (SKIV2L2)
Transfer RNA biogenesis [BR:
mmur03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105877295 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
105877295
NCBI-ProteinID:
XP_012631148
Ensembl:
ENSMICG00000012779
UniProt:
A0A8C5YEF3
LinkDB
All DBs
Position
12:49698863..49789910
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGTKKDKEKEKGKWKGPPGSADKAGKRFDGKLQSESTNSG
KNKRDADFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKKSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggatgagctatttagcgtgtttgaggatgactcgaccactgcg
gccggaaccaaaaaagacaaggaaaaggagaaagggaaatggaaggggcctccagggtct
gccgacaaggccggtaaacgttttgatggcaaattacaatcagagtcaactaatagtgga
aaaaataagagagatgcagattttgaaggcacagacgaacctatctttggaaagaagcca
aggatagaagagtcaataactgaagacttaagtttggcagatctgatgcccagagtcaag
gtacagtcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccatttattctt
gatgcttttcaaagagaagccattcaatgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgaatatgccattgctttggccttgagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccaaaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgacaggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaatccattacatgagagattca
gaacgtggtgtagtgtgggaagaaaccattattttgcttcctgataatgtccactatgtc
ttcctttcggctactattccaaatgcccgacagtttgctgaatggatttgtcatttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccattacaacactacatt
tttccagcaggaggagatggcctgcatcttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtgcttcgagatgcaggtgatttggcaaaaggagat
cagaagggacggaaaggaggaacaaaaggaccatcaaatgtgtttaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtatttagtaatgcaattgactgcttgtctgatgaagataagaaactccctcaa
gttgaacatgtacttcctcttttgaagcgggggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgtcttatttacaaat
gcccgcaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagat
gaaaagatgagcccaacaattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctataatatggttttgaacttactgcgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttctaccagtttcagcattacagagcaattccagga
gttgtagagaaggtaaagaagtcagaagaacagtataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattacaagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgactttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatccattatatgtagtagaagtacttcta
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gacgagaaaggggagatgcaggttgtcccagttttggtgcatctcctgtctgctatcagc
agtgttagactttatattcctaaagaccttcggccagtggacaatagacagagtgtttta
aaatcaatccaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gacgatatgggcattcaagatcaaggactgaaaaaagtcattcagaaagtggaggctttt
gaacatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaagaaagctcagattgcaatagatattaaatctgcaaagcgagaactgaag
aaagcaagaacagtcctgcaaatggatgaactcaaatgtcgcaaacgtgttttaagaagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctt
tctgcagaacaggcaacggcattattaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggaaacttacttaagc
tcattcaaacctcacttaatggatgtcgtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttgtaa
DBGET
integrated database retrieval system
