Mycobacteroides abscessus subsp. massiliense GO 06: MYCMA_0614
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Entry
MYCMA_0614 CDS
T02177
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmv
Mycobacteroides abscessus subsp. massiliense GO 06
Pathway
mmv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYCMA_0614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmv03400
]
MYCMA_0614
Enzymes [BR:
mmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYCMA_0614
DNA repair and recombination proteins [BR:
mmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MYCMA_0614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AFN62776
LinkDB
All DBs
Position
complement(3620663..3624313)
Genome browser
AA seq
1216 aa
AA seq
DB search
MTATTPPLAGVIRTALRDPAFDVLAPAIAAKTGLDLTAPTCARAFVVTGMADASDAPVLV
VTATTREAQDLTAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLHVLHRLAHPEDS
RMGVPLRVVITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAG
RGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELEVASVLAMPCRE
LLLTDQVRARAAELASAAGVSGSEEGHRLGAGVGEMLAKLADGICVDGMESLLPVLHSGK
LTMLVDHLPDHAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGSDAPIDVEALADS
GFRELEDVKHAAGEAGYPWWSLSPLGMDNDQAVGLAVRPSPSARGHKEGAAEIFAMLRAQ
VMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGHLTDGVVLTG
ANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQHGIGRFVEMVERT
VGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWTN
TKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETVDQLTAITEV
KSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR
TAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQ
RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
HDDKQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVVAHGQMPEEMLER
TVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGYA
YFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF
DLYVRLVGEAVEAYRAAADGKTVQTAEEPKEVRIDLPVDAHLPTDYIGSDRLRLEAYRRL
AAAADAAQINAAVEELTDRYGPLPLPVQRLVAVASLRLLCREMGITDLSVVGTNIRIQPL
PLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSDRIRDLELVHMIAELLVALS
GRPAGSVDITPLEVSK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgactaccccgcctctcgccggggtgatccggacagccttgcgggatcccgca
ttcgatgttcttgctccggctatcgccgccaagaccggcctcgatctgaccgccccgaca
tgtgcacgcgcatttgtcgtgacgggtatggccgatgcgagcgatgcgcccgtcttggtt
gtgacggccaccacccgcgaggcgcaagacctcaccgccgagctacgcgacgtgtacggc
gacgcggtgacgctgctgccgtcctgggagacgctcccgcatgagcgattgtcacccggc
gtggacacggtgggcgcgcggctgcacgtgctgcaccggttggcccatccggaggattcg
cggatgggggtaccgctgcgtgtggtgatcaccaccgtgcgctcgctgctacagccgatg
tctcccgagctgttcgatctggaaccggtggagctggccgtcggggccgagctggagttc
gacggggtgatcgcgcgtttggtcgagctcgcgtacacgcgggtggacatggtggccggc
cgcggtgagttcgcggtgcgcggcggcattctcgacgtgttcagtcccactgccgaccat
ccggtgcgcgtcgagttctggggcgacgaggtcagcgagatgcgctacttctccgtcgcc
gaccagcgttcgatcccggagctggaggtcgcctccgtgctcgctatgccctgtcgcgaa
ctgctcctcaccgaccaggtgcgggcccgggctgccgagctggcctccgccgccggagtt
tccggcagcgaggagggacaccggctcggcgccggggtgggggagatgctcgccaaactg
gccgacggaatctgtgtcgacgggatggaatcgcttctgcccgtgctgcattcgggtaag
ctcaccatgctggtcgaccatctgccagaccatgcgccagttctggtgtgtgaccccgag
aaggttcggacgcgcgcggcggacctggaacgcaccggccgggagttcctggaggcgtcg
tggtcggttgccgctatcggttcggatgcgccgatcgatgttgaagcactggcagattcg
ggattccgcgaactcgaggacgtcaagcacgcggccggtgaggccggatatccgtggtgg
tcgctgagcccgttgggcatggacaacgatcaggcggtcgggctggcggtgcggccgtcg
ccctccgcgcgtggccacaaggagggtgcggcggagatcttcgcgatgctgcgtgcccag
gtgatgaccggcgggcgggcagcggtggtcgccgccggagccggaaccacacatcggatc
atcgaacagttggcggaaaccgaaacccccgcaacgctgttagagccgggtgcggaaccc
gccgagggcgtggtcggggtgctgcgcggtcacctcaccgacggtgtcgtgctcaccggg
gcgaacatcgtcatcgtcaccgagacggatctgaccggtagccgggtcgcggccaccgac
ggtaagcggctaccggccaagcgccgcaaccaggttgatccgctggcgctttccgccggt
gacctggtggtgcacgatcagcacggcatcgggcgattcgtggagatggtggaacgcacg
gtcggcggagcccgccgggagtacctggtgctggagtatgcctcgggcaagcgtggtgcc
gcggccggtgggcagagcgaccgcctgtacgtgccgatggattccctagatcagctgtcc
cggtatgtgggtggtgaatcgcccggcctgagtcggctgggcggtagcgactggaccaac
acgaagaccaaggcgcgcaaggcggttcgtgagatcgcgggcgaactcgtggcactgtat
gcggcgcgccaggccgcgcccgggcatgccttcgctccggacaccccatggcagcgcgag
atggaagacgcgttcggcttcgtcgagaccgtcgatcagctgaccgccatcaccgaagtg
aaatcggatatggaaaaaccggttccgatggatcgcgtggtgtgcggcgatgtgggttac
ggcaagaccgaaatcgcggtgcgtgcggcgttcaaggccgtccaggacggtaagcaggtg
gcggtgctggtgcccaccacactgctcgccgaccagcatctgcagacgttcaccaatcgc
accgccggctttccggtgaaggtggcgggcctgtcgcggttcaccgatccgttgacctcg
aagctggtcgtcgagggaatggccgatggttcggtcgacatcgtcatcggcacgcaccgg
ctactgcagaccggtgtgcggtggaaggacctcggcctggtgatcgtcgacgaggaacag
cggttcggcgtggagcacaaggagcacatcaaggcgctgcgcacccatgtggacgtgctc
accatgagcgcgaccccgattccgcgcaccctggagatgagcctggccggtatccgcgag
atgtcgaccatcttgaccccgcccgaggagcgttatccggtgctcacctatgtgggcccg
cacgacgacaagcaggtggcggcggcgctgcgccgcgaattgctgcgcgatggccaggcg
ttctacgtgcataaccgggtgagcaccatcgacaaggccgccgcgcgcatacgcgacctc
gttccggaggccagagtcgttgtcgcacacggccagatgccggaagagatgttggagcgc
accgtccagggattctggaaccgggaatacgacatcctggtgtgtaccaccatcatcgag
accgggctggacatctccaacgccaacaccctgatcgtggagcgggccgacatcttcggt
ctgtcccagctacaccagttgcgtggtcgtgtcggccgcagccgcgaacgcgggtacgcc
tatttcttgtattcacccgaggtgccgctcaccgagaccgcttacgacaggctttccacg
atcgcgcagaacaacgacctgggcgcgggcatggcggtggccatgaaagacctggaaatc
cgtggcgccggcaatgtgctcggtgtcgagcaatccggacacgtcgccggggtgggtttc
gatctgtacgtgcgtctcgtcggcgaggccgtcgaggcgtatcgcgctgccgccgacggg
aagacggtacagaccgccgaggagcccaaggaggtgcgcatcgatcttccggtcgacgcg
catctgcccaccgactacatcggcagcgatcggctgcggctcgaggcataccgccggctg
gcggctgccgcggacgccgcacagatcaatgccgcggtcgaggagctcaccgaccgctac
ggaccactgccgctgcccgtgcagcgactggtcgcggtcgcttcgctgcgtttactgtgc
cgcgagatgggaatcaccgatctttccgtggtcggtaccaatattcggatacagccgttg
ccacttcttgattcggcgcagctgaggctgaagcgtttgcatccggccgcgcaatatcgc
gcgacgacttccgttgtgcaggtgcccatcccacgtgccggcgacggcggtgtgggttcg
gaccggattcgggatctggagcttgtgcacatgatcgccgagctgttggtcgcgttgtcc
gggcgcccggcgggcagtgttgatataacaccactggaggtgagcaaatga
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