Myotis myotis (greater mouse-eared bat): 118657662
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Entry
118657662 CDS
T07220
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmyo
Myotis myotis (greater mouse-eared bat)
Pathway
mmyo03013
Nucleocytoplasmic transport
mmyo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmyo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118657662 (UPF1)
03015 mRNA surveillance pathway
118657662 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmyo03019
]
118657662 (UPF1)
Enzymes [BR:
mmyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118657662 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118657662 (UPF1)
Messenger RNA biogenesis [BR:
mmyo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118657662 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118657662 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118657662
NCBI-ProteinID:
XP_036167868
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAAGQLDVQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
gctgagcttctcggcgccgacacacaaggctccgagttcgagttcacagacttcaccctc
cccagccagacgcagacgcctcccggaggccccggcggccctggaggtggcggcccggga
gtcccggtcggcgcgggtgctggcgctgcggccggacagcttgacgttcaggttggagga
cctgagggcatcctgcagaatggggctgtggatgacagtgtggccaagaccagccagttg
ctggcggagttgaacttcgaagaagatgaagaagatacctattacacaaaggacctacca
gtacatgcctgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggtgagaca
gtcctggagtgttacaactgtggctgccgcaacgtcttcctgcttggcttcatccctgcc
aaggctgactcagtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaagatcgctgcttcctc
tcctggctggtcaagatcccttcagagcaggagcagcttcgggcccggcagattacagcc
cagcagatcaacaagttggaggagctttggaaggagaacccttctgccaccttggaggac
ctagagaagcccggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcc
taccagtaccagaacatatttgggcctctggtcaagctggaggctgactatgacaagaaa
ctgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggg
gacctggcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacacacaac
tttcaggtggatttcgtgtggaaatccacctcatttgacaggatgcagagtgcactgaaa
acttttgctgtcgatgaaacctctgtatcaggctatatctaccataaactgcttggccac
gaggtggaggacgttatcatcaagtgccagctgcccaagcgcttcactgcacaggggctg
cccgacctcaaccactctcaggtttatgctgtgaagactgtgctgcaaagaccgctgagt
ctgatccagggaccaccaggaacagggaagacagtgacctccgccaccattgtctaccac
ctggcacggcagggcaatgggcctgtgcttgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagttgtgcggctctgcgctaagagc
cgcgaggccattgactccccagtgtcattcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctaaaggacgagactggggaactgtca
tctgccgatgagaagcggtaccgagccctgaagcgcacagctgaaagggagctgctcatg
aacgcggacgtcatctgctgcacatgtgtgggtgcaggagaccccaggctggccaagatg
cagttccgctccattcttatcgacgagagcacccaggccacggagccggagtgcatggtc
cctgtggtccttggagccaagcagctgatccttgtgggtgaccactgccagctgggcccc
gtggtgatgtgcaagaaggcagccaaggccgggctgtctcagtcactgttcgagcgcctg
gtggtgctcggcattcgtccaatccgcctgcaagtccagtatcggatgcaccctgcactc
agtgccttcccatccaacatcttctatgagggctctctgcagaacggtgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccgatgttcttc
tatgtgacccagggccaggaggagatcgccagctcgggtacctcctacctgaacaggacg
gaggctgcaaatgttgagaagatcaccacgaagctgctgaaggcaggtgccaagccggac
cagattggcatcatcacaccctatgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctgtaccaggaggtggagattgccagtgtggatgca
ttccaggggcgcgagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaatgaccctaggcggcttaacgtggccctgacccgagcaagatat
ggagtcatcattgtgggcaaccctaaggccctgtccaagcagcccctgtggaaccacctg
ctgaattactacaaggagcagaaggtgctggtggaggggcctctgaataacctgcgggag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgaccacagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgat
cggagcagccagggccggccctcgaacatgtacttccagacccacgaccagcttggtatg
atcagtgctggccccagccatgtggccgccatgaacattcccatccccttcaacttggtc
atgccacccatgccaccaccagggtattttggacaggctaacgggccagctgcaggcaga
ggcaccccgaaaggcaagacgggccgtggcggacgccagaagaaccgctttggccttcct
gggcccagccagacgaacctgcccagcagccaggccagccaggatgtggcatcacagccc
ttctctcagggggccctgacacagggctacatctccatgagccaaccctcccagatgagc
cagcctggtctctcccagcctgagttgtcccaggacagttaccttggtgatgaatttaag
tcccagattgatgtggcgctatcgcaagattctacgtaccagggggagcgggcgtaccag
cacggtggagtgacgggactgtctcagtactag
DBGET
integrated database retrieval system
