Miniopterus natalensis (Natal long-fingered bat): 107540056
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Entry
107540056 CDS
T05883
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mna
Miniopterus natalensis (Natal long-fingered bat)
Pathway
mna03030
DNA replication
mna03410
Base excision repair
mna03420
Nucleotide excision repair
mna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107540056 (LIG1)
03410 Base excision repair
107540056 (LIG1)
03420 Nucleotide excision repair
107540056 (LIG1)
03430 Mismatch repair
107540056 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mna03032
]
107540056 (LIG1)
03400 DNA repair and recombination proteins [BR:
mna03400
]
107540056 (LIG1)
Enzymes [BR:
mna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107540056 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
107540056 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
107540056 (LIG1)
DNA replication proteins [BR:
mna03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
107540056 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
107540056 (LIG1)
DNA repair and recombination proteins [BR:
mna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
107540056 (LIG1)
NER (nucleotide excision repair)
Other NER factors
107540056 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
107540056 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
107540056
NCBI-ProteinID:
XP_016072219
LinkDB
All DBs
Position
Unknown
AA seq
917 aa
AA seq
DB search
MQRSIMSFFSPKKEGKAKKPEETSNSIREAEPPPKVALKERNGVVPERDSPVKRPGRRAA
RVLGSEGEEEDEAATPPKSQPAPDSLQGSPPGPVTFPETSPSLSNTSPVHISPSGIPKRR
TARKQVSKRTSQDVVAEHRAPKRKKEEEAETPTESLPELEGVKEEEAEEGDPPTTPPEPQ
NACRAEPLTESGPEPKQVKQEPQDEGQAEPSPRIPRTLSSFFTPRKPAIKKEVKEEGSGT
PSKEMPKGLLHSDMSSSPLDPSSYNPAKKNYHPLQDACWTQGQKVPYLAVARTFEKIEEV
SARLRMVETLSNLLRSVVALSPPDLLPILYLSLNCLGPPQQGLELGVGDGVLLKAVAQAT
GRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPALTASGVIAKFRDIARLTGSASIAR
KIDIIKGLFVACRHSEARFITRALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVD
AGKGKTAEARKAWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCKLSPGVPLKP
MLAHPTRGVSEVLKRFDEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDII
SRIPKMKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDL
IYLNGKSLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVDQIAEFLEQSVKDSCEGL
MVKTLDVDATYEFAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAS
YDAESEELQAICKLGTGFSDEELEEYHQTLQALVLPTPRSYVRADGAVAPDHWLEPSTVW
EVRCADLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKKPEEATTSAQVAWLYRRQSQ
IQNQEDTDLDSDLEDFY
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttctcccccaagaaagagggcaaagcaaagaagcca
gaggagacatccaacagcatcagagaggctgagccccctccgaaggtggcgctgaaggag
cggaatggagtggtgcctgagagggactctccggtgaagaggccggggaggagggcggct
cgggtcctgggcagcgaaggggaggaggaggatgaagccgccacgccccccaaaagccag
cctgcccccgactctctacagggctcccctcccggtcctgtcacatttcctgagaccagc
ccttccctctccaacacttctccagtgcacatttccccgtcagggatcccgaagcgtcgc
acagctcggaagcaggtttctaaacggacgtctcaggatgtcgtggccgagcaccgagca
cccaagaggaagaaggaggaagaagcagagaccccgacagaaagcctcccagaactggaa
ggggtcaaagaggaggaagcagaagagggggacccacccacgacgccccctgagccccaa
aatgcctgcagagcagagcccctgacagaaagtggtcccgagcctaagcaggtgaagcag
gagccccaggacgagggccaagctgagccttcccctagaattcccaggacgctgagcagt
ttcttcacccctcggaagcctgcaatcaaaaaagaagtgaaagaagaagggtctggcacc
ccaagcaaggagatgcccaaaggactcttgcactcggatatgagctccagccccctggac
ccatccagctacaatcctgccaagaaaaactaccatcccctccaggacgcatgctggaca
cagggccagaaggtcccttatctggctgtggcgcggacctttgagaagatcgaggaggtt
tctgctcggctcaggatggtggagacactgagcaacttgcttcgctccgtggtggccctg
tcacctccagacctcctccccatcctctatctcagccttaactgcctcgggcctccccag
cagggcctggagcttggcgttggggatggtgtccttctaaaggcggtggcccaggccaca
ggtcggcagctcgagtctgtccgggctgaggcagccgagaagggggatgtggggctggta
gctgagaacagccgcagcacccagagactcatgctgccccctcccgccctcactgcctcc
ggggtcatcgccaagttccgagacatcgcccggctcactggcagcgcttctatagccagg
aagattgacatcatcaaaggcctctttgttgcctgccgccactcggaagcccgattcatc
accagagccctgagtggacggctgcgccttgggctggcagagcagtcggtgctggctgcc
ctcgcccaggccgtgagcctcacgcccccaggccaagaattccccccagctgtggtggat
gctgggaagggcaagacagcggaggccagaaaggcgtggctggaggagcaaggcatgatc
ctgaagcagacgttctgcgaggtgcctgacctggaccggatcgtccctgtgttgctggag
catggcctggaacggctcccggagcactgcaagctgagcccaggggttcccctgaaacca
atgttagcccaccccacccggggtgtcagtgaggtcctgaaacgcttcgatgaggcagct
ttcacctgcgagtacaaatacgatgggcagagggcacagatccatgttctggaaggcggg
gaggtgaagatcttcagcaggaatcaggaagacaatactgggaagtaccctgacatcatc
agccgcatccccaagatgaaactcccgtcagtcacatccttcattttggacgcagaggct
gtggcttgggaccgagaaaagaagcagatccagccattccaagtgctcaccacccgcaaa
cgcaaggaggtggacgcagcagagatccaggtgcaggtctgcttgtacgctttcgatctc
atctacctcaacggaaagtccctggtgcgtgagcccctttcccgacgccggcagctgctc
cgagagaacttcgtggagacggagggtgagtttgtctttgccacctccctggacaccaag
gatgtggaccagattgcagagttcttggagcagtcagtgaaagactcctgtgaggggctg
atggtgaaaaccctggatgtcgatgccacctacgagttcgccaagagatcacacaactgg
ctcaagctgaagaaggactacttggacggcgtgggcgacaccctggatcttgtggtgatt
ggcgcctacctgggccgggggaagcgggccggccgctatgggggcttcctgctggcctcc
tacgatgcggagagtgaggagctccaggccatatgcaagctcggaactggcttcagcgat
gaagagctggaggaatatcaccagaccctccaggccctagtactgcccaccccacgctcc
tacgtccgggcagacggtgccgtggcccctgaccactggctggagcccagcactgtgtgg
gaggtcagatgcgccgacctctccctgtctcccatttacccggctgcccgtggtctggtg
gacagtgagaaggggatctcccttcgcttccctcggtttgttcgcgtccgtgaagataag
aagccagaggaggccaccaccagtgcccaggtggcctggctgtacaggaggcagagtcag
attcagaaccaggaggacacagacctggactccgacctggaggatttctactag
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