Moraxella nasicaprae: LU297_04165
Help
Entry
LU297_04165 CDS
T09131
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mnc
Moraxella nasicaprae
Pathway
mnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LU297_04165 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnc03019
]
LU297_04165 (rnr)
03016 Transfer RNA biogenesis [BR:
mnc03016
]
LU297_04165 (rnr)
Enzymes [BR:
mnc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LU297_04165 (rnr)
Messenger RNA biogenesis [BR:
mnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LU297_04165 (rnr)
Transfer RNA biogenesis [BR:
mnc03016
]
Prokaryotic type
tRNA degradation factors
LU297_04165 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
UXZ05644
LinkDB
All DBs
Position
complement(877292..879553)
Genome browser
AA seq
753 aa
AA seq
DB search
MTNKTKKSTWNDPNAIAEAQKYQNPIPSRLLILQTVAQMTNAGEAATQESLASHFGFLDD
EDRFFALTNRLKAMLRDGQLERLDGFHYSIAPLPTVVTGTIAANAKGFGFVVLDDMPDLF
VHEKQMRVVFDGDKVEAIASEYKGRPEARIGSVIERKQHEFVGRLEYDGEGYFVQLQGVN
AHQPITVTDENVAAMKAGIGDDVKVSLIDYPTYQEYATGKITELLSGLNDRELIIETTLY
NHAIPHQFSDETIAQAQNYDKPSKQDFQGRVDLRELPLVTIDGEDSRDFDDAVFACKRAG
GNYRVVVAIADVSHYVTPNSPLDIDAYERGTSVYFPHRVIPMLPEELSNDLCSLNPNVDR
LCMVADMKLSRAGKITAYEFYPAIMHSKARLTYNQVNAYFDDPTNQTLPDALVKNPEVLK
SIDTLHQLYQVLDARREERGAMAFETAETYIKFGEDGDIVDIVARTRGDAHKLIEECMLL
ANTCAANFALKHELPVLYRNHDKPNDEKTLRLHEYAKSLGLSFPSESPTHEDYQRIIKAT
ADRPDAISIHSMLLRSMMQANYSPDNIGHFGLAYDEYSHFTSPIRRYPDLMLHRAIKDKV
TKQKPVQPIYASLDEAGEQTSTTERRAEEASREVETWLKCHYMQRHIGDEFTAIVSTVTN
FGLFVTLNELFIEGLIHISGLGDSYFTYDEKQQKLLGDNGATFGLGDTLIIKVAGVNMDL
LQIDFALVEKLDEINERPKAKKSRKKSRRKSKD
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacaaaacaaaaaaaagcacatggaatgaccccaatgccatcgcagaggctcaa
aaatatcaaaaccccattccgtctcggttattgattttgcagacagtcgctcagatgacc
aatgctggcgaagctgccacccaagagtctttggcaagtcattttggatttttggacgat
gaagatcgattttttgctttgaccaatcgactcaaagccatgctgcgtgatggtcaatta
gaacgcctagatggttttcattatagcatcgctcccttgccaacggtcgtgacaggaacc
attgccgccaatgccaaaggttttggttttgtggtgcttgatgatatgccagatttattc
gtgcatgaaaaacaaatgcgtgtggtctttgatggcgataaggttgaggcaatcgccagc
gaatataagggcagacctgaggctcgtattgggtcggtcatcgaacgcaagcaacatgag
tttgtggggcgactagaatatgatggcgagggctattttgttcagttgcaaggcgtgaat
gcccatcagcccatcacggtgactgatgagaatgtcgctgccatgaaagctggcattggc
gatgatgttaaggtgtctttgattgactatccgacctatcaagaatacgccacaggcaag
attaccgagctattaagcggtctaaatgatagagagctgattatcgaaaccacgctgtat
aatcacgccattccacaccaatttagtgatgaaaccatcgcccaagcccaaaactatgac
aagccaagtaagcaagattttcaggggcgtgtggatttgcgagagttgccattggtcacc
atcgatggcgaggattcaagagattttgatgacgcagtttttgcctgtaagcgagcgggg
ggcaactaccgagtggtggtcgccatcgctgatgtcagccattatgtgacgccaaattcg
cctttggatattgatgcttatgaacgaggcacttcggtatattttcctcatcgtgtgatt
ccgatgttgccagaagagctgtccaatgatttgtgttcgctcaatcccaatgtggacaga
ctgtgcatggtggcggatatgaaattatcccgagcgggcaaaatcaccgcctatgagttt
taccctgcaatcatgcactcaaaagccagattgacttacaatcaggtcaatgcctatttt
gatgacccaaccaaccagactttacctgatgctttggtcaaaaatcctgaggtgctaaaa
tcgattgatactttgcatcagttgtatcaggtgctggacgctcgccgtgaagagcgaggg
gcgatggcttttgagacggcagagacttatattaaatttggcgaagatggcgatattgtc
gatattgtcgctcgtactcgtggcgatgctcacaagctcatcgaagagtgtatgctgctt
gccaatacttgtgcggcaaactttgccctaaaacatgaattgcctgtgctgtatcgcaat
catgataaacccaatgacgaaaaaacgctcagactgcacgaatatgccaaaagtttgggg
ttgtcttttccgtcagaatcgcccacacacgaggactatcaacgcatcatcaaggcgact
gccgaccgacctgatgccatcagtattcatagtatgcttttgcgttcgatgatgcaggca
aattatagccctgataatatcggtcattttggcttggcgtacgatgagtacagtcatttt
accagtccaatccgtcgctatcctgatttgatgttgcatcgtgccatcaaagacaaagtc
accaaacaaaaacctgttcagccgatttatgcttctttggacgaggcaggcgagcagacc
agcaccaccgaacggcgtgccgaagaggcatcacgagaggtggaaacttggctaaaatgc
cactatatgcagcgtcatattggcgatgaatttaccgccattgtgtccaccgtgaccaat
tttgggctgtttgttacgctcaatgagttattcatcgaaggcttgattcatatctctgga
ttgggtgatagttattttacttatgatgaaaaacaacaaaaattattaggcgataatggg
gcaacatttggcttgggcgatacactcattatcaaagttgctggcgtgaatatggattta
ttgcaaattgattttgctttagtggaaaaattagatgagattaatgagcgtccaaaagcc
aaaaaatcacgcaaaaaaagcagacgcaaaagcaaagattga
DBGET
integrated database retrieval system
