Microbacterium neungamense: JSY13_08590
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Entry
JSY13_08590 CDS
T09212
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mnf
Microbacterium neungamense
Pathway
mnf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JSY13_08590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnf03400
]
JSY13_08590
Enzymes [BR:
mnf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JSY13_08590
DNA repair and recombination proteins [BR:
mnf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JSY13_08590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UWF76886
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All DBs
Position
1777162..1779699
Genome browser
AA seq
845 aa
AA seq
DB search
MASGGQVVQIDGRRLRVTNLDKIVYPETGTTKGEVIAYYTRIAPVMLPHVRGRPATRKRW
VDGVGTTDAPAEAFFTKQLEQGAPDWIRRMPIEHSDGPKEYPLIEDVPTLVWMAQMAALE
LHVPQWRFTASGGRGRPDRMVLDLDPGPEVGLPECAEVARLARGILTGMGLEPMPVTSGS
KGIHLYCRLPTSEDGTGLQTSDEVSAVAKELARLIEADHPDLATHVMAKSARGGKVFIDW
SQNSASKTTIAPYSLRGRAHPWVAAPRTWEELDDPELAHLSFGEVLDRVDAGIDPFASLA
PPSTALSSYLAKRDASKTPEPMPRTASAGGSGAPRFVIQEHHASRLHYDLRIERDGVLIS
WAVPKGVPETSDRNHLAVMTEPHPLEYLTFEGEIPKGEYGAGTMTLWDTGTVALEKWRDD
EVIGTFTGRPGGRLGSVRLALIRTEGSGEKSQWLLHRMKDPHGHPTAHPGEPPSAPEPVA
GSAATHGDASTGSASGGSASGGDASTGSAFAGSASGDKPTLATLEPMLAEAGTPGLARAL
GDPAWAEIKWDGIRALGTWRDGRMRLHARRGTDITARYPELTADGAPLLPADEAVVDGEI
VAFDAAGRPSFARLQNRMHLTRPREIEREVVRTPVVYLLFDLLRLNGHELTGMPLRQRRE
LLEQVAADLDAPVQVAPVFDDIDAALDASRQYGLEGVVAKDPASRYRPGVRSSAWLKLKH
TRTQEAVIVGIRPGQGNRQGTIGSLLLAVPEEDAGTLRLRYVGKVGSGFTERMLADLSAR
LEPLRTPAPAVPDVPRPEAKDAQWVRPELVGEVEFSEWTPGGILRHARWRGLRPDKTPDE
VRVEP
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggcatccggcgggcaggtcgtgcagatcgacgggcgccgcctgcgcgtgaccaatctc
gacaagatcgtctaccccgagaccggcaccaccaagggcgaggtgatcgcctactacacg
cggatcgccccggtgatgctcccgcacgtccgcggtcgtccggcgacgcgcaagcggtgg
gtggacggcgtggggacgacggatgccccggccgaggcgttcttcaccaagcagctcgag
cagggcgccccggactggatccggcggatgccgatcgagcactccgacgggccgaaggag
tacccgctcatcgaggacgtccccaccctggtgtggatggcgcagatggcggccctggag
ctgcacgtgccgcagtggcggttcaccgcctcgggcggacggggccgtcccgatcgcatg
gtgctcgacctcgatcccggcccggaggtcgggttgcccgagtgcgccgaggtggcgcgg
ctggcccgcggcatcctgaccgggatggggctggagccgatgccggtcaccagcggcagc
aagggcatccacctctactgccggctgcccacgagcgaggacggcaccggcctgcagacc
agcgacgaggtctccgcggtggcgaaggagctggcccggctgatcgaggcggaccacccc
gacctggcgacgcacgtgatggcgaagtccgcgcgcggcggaaaagtgttcatcgactgg
agccagaacagcgcgtcgaagacgaccatcgcgccgtactcgctgcgcggccgcgcgcac
ccctgggtcgcggcgccgcgcacgtgggaggagctggacgaccccgagctcgcgcacctc
tcgttcggcgaggtgctggaccgggtggatgccgggatcgacccgttcgcctccctcgcc
ccgccgtccaccgccctctcctcgtatctggccaagcgcgacgcgtcgaagacgccggag
cccatgccgcggacggcatccgccggcggctcaggcgccccgcggttcgtcatccaggag
caccacgcctcacggctgcactacgacctgcgcatcgagcgcgacggggtgctgatcagc
tgggcggtgccgaagggggtgccggagacctcggatcgcaatcatctggccgtgatgacc
gagccgcatccgctggagtacctcaccttcgagggggagatcccgaagggcgagtacggg
gcgggcaccatgacgctgtgggacaccggcacggtggcactggagaagtggcgcgacgac
gaggtgatcggcaccttcaccggccgccccggcgggcggctggggtcggtgcggctggcg
ctcatccgcaccgagggcagcggggagaagtcgcagtggctcctccaccgcatgaaggac
ccgcacgggcatccgacggcccacccgggcgaacccccgtcggcccccgagcctgtcgcc
gggtccgcggccacgcacggcgacgcttcgacgggctcagcgtccggaggctcggcgtcc
ggaggcgacgcttcgacgggctcagcgttcgcaggctcggcgtccggagacaagcccacc
ctcgcgacgctcgagccgatgctggccgaggcggggacgcccggcctcgcccgcgccctc
ggggatccggcctgggcggagatcaagtgggacggcatccgcgccctcggcacgtggcgg
gacgggcggatgcggctgcacgcccgccgcggcaccgacatcaccgcccgctaccccgag
ctcaccgccgacggcgcccctctcctgcccgccgacgaggcggtcgtggacggcgagatc
gtcgccttcgacgcggccggacgccccagcttcgcccggctgcagaaccggatgcacctg
acccggcctcgggagatcgagcgcgaggtggtgcgcacgcccgtcgtgtacctgctgttc
gacctgctgcggctgaacgggcacgagctcaccgggatgccgctgcggcagcgccgggag
ctgctcgaacaggtcgccgccgatctcgacgccccggtgcaggtcgccccggtgttcgac
gacatcgacgcggcgctggacgccagccggcagtacggtctggagggggtggtcgccaag
gaccccgcctcccgctaccggccgggcgtgcggtcgtcggcgtggctgaagctcaagcac
acccgcacccaggaggcggtgatcgtgggcatccgtcccgggcagggcaaccggcagggc
acgatcgggtcgctgctgctggccgtgccggaggaggatgccggcacgctccggctgcgc
tatgtgggcaaggtgggcagcgggttcaccgaacggatgctggccgacctgtccgcccgc
cttgagccgctgcgcacgccggccccggcggtgccggacgtgcctcgaccggaggcgaag
gacgcgcagtgggtgcgacccgagctcgtgggcgaggtggagttctcggagtggactccc
ggcggcatcctgcggcacgcgcgctggcgcggcctccgaccggacaagacacccgacgag
gtgcgcgtggagccgtga
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