Mycobacterium novum: MNVM_09600
Help
Entry
MNVM_09600 CDS
T06926
Symbol
ligD_1
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mnm
Mycobacterium novum
Pathway
mnm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MNVM_09600 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnm03400
]
MNVM_09600 (ligD_1)
Enzymes [BR:
mnm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MNVM_09600 (ligD_1)
DNA repair and recombination proteins [BR:
mnm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MNVM_09600 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Methyltransf_24
Motif
Other DBs
NCBI-ProteinID:
BBX11879
UniProt:
A0A7I7JKJ1
LinkDB
All DBs
Position
complement(1036641..1038917)
Genome browser
AA seq
758 aa
AA seq
DB search
MAAQPFQTRVKLTNADKVLYPATGTTKAQVYDYYTRIAEVMLPHIAGRPVTRKRWPNGVA
QDSFFEKQLASSAPAWLPRAEVQHRSGITAYPIIEDLDGLAWIAQQAALEVHVPQWRFEA
EWTGGGRVLKPGQASRLVFDLDPGEGVSMSQLAQVARAIRDLMSELDLDTFPVTSGSKGV
HVYAALERPVTSAGAVTVAKRVAQQLESAMPKLVTATMAKKLRAGKVFVDWSQNNASKTT
IAPYSLRGRAHPTVAAPRTWAELDDPDLRQLRFDEVLERVEHDGDLLAGLDGPLEGQDRL
AVYRAKRDAGRTPEPVPAAAPAADEGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PTTTSVNHLAVRTEDHPLEYGGFEGTIPKGEYGAGTVRIWDSGSYVTEKWQDTSEKGEVI
VVLRGDRISGRYALIRTGGDQWLAHRMKDQQTFAFTDLAPMLATHGSVSGLDPKVWAFEG
KWDGYRLLVEADRGRVRLRARSGRDVTGEYPQLQTLAAELTEHHVVLDGEVVALDAAGVP
SFAAMQNSARSTRVEFWAFDLLYLDGRPLLRAAYRDRRRLLATLAQGTGLVVKDLLAAGG
AEALEQSRRLGWEGVIAKKWDSPYQPGRRSPAWVKDKHWRTQEVVIGGWRAGEGARGGGI
GSLLMGIPEGDGLRFVGRVGTGFTERALAALKKKLTPTDKSPFDAPLPRADAKGVTFVRP
TLVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVSED
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacagccgttccagacccgggtgaagttgaccaacgccgacaaggtgctctac
ccggccacgggcaccaccaaggcgcaggtctacgactactacacgcgtatcgcggaggtg
atgctgccgcacatcgcgggacggccggtgacccgcaaacgttggcccaacggcgtggca
caggactccttcttcgaaaagcagctcgcctcctcggcgccggcctggctgccccgcgcc
gaggtgcagcaccgctccggtatcaccgcctatccgatcatcgaggacctcgacggcctg
gcctggatcgcccagcaggccgcactggaagtccacgtgccgcagtggcgtttcgaggct
gaatggacgggcggcggccgggtgctcaagccgggccaggcaagtcgtctggtgttcgac
ctggaccccggggagggggtgtcgatgagccagctggcccaggtggcgcgcgcgatccgc
gacctgatgtccgagctggacctggacacattccccgtaaccagcggtagcaagggggtg
cacgtctacgccgcactggagcgcccggtcaccagtgccggcgcggtcacggtggccaaa
cgcgttgcgcagcaactcgagagcgccatgccgaagctggtgaccgcgaccatggccaaa
aagctgcgggcagggaaggttttcgtggactggagccagaacaacgcctcgaagaccacc
atcgcgccgtattcgctgcggggccgggcccacccgacggtggccgccccgcgcacctgg
gcggagctggatgacccagacctgcggcagctgcgctttgacgaggtgctggagcgcgtt
gagcacgacggcgatctgttggccggcctggatggacccctggaaggtcaagatcgactt
gcggtgtaccgggccaagcgtgacgcgggccgcacgcccgaaccggtgccggccgcggcg
ccggcggcagatgagggcaacagtttcgttatccaggagcatcatgcccgccggctgcac
tacgacttccggctggagcgcgacggggtgttggtgagttgggcagtgcccaagaacctg
ccgacgacgacgtcggtcaaccatctggcggtgcgcaccgaggaccatccgctggagtac
ggcggcttcgagggcaccatccccaagggtgagtacggcgccggcacggttcgtatctgg
gattcgggcagctacgtgaccgagaagtggcaggacacgtccgaaaagggggaggtgatc
gtcgtgttgcgcggcgatcggatctcgggccgctacgcgctgatccggaccggcggagat
cagtggctggcgcaccggatgaaggatcagcagacgttcgcgttcaccgacctggccccc
atgctggccacccacggttcggtgagtgggctggacccgaaagtctgggccttcgaaggc
aagtgggacggctaccgactgctggtcgaggccgaccgcggccgggtccggttgcgggca
cgcagcgggcgcgacgtgaccggcgaatacccgcagctgcagacactggccgcagagctc
accgagcaccacgtcgtgttggacggcgaagtcgtcgcactcgatgccgccggcgtgccc
agttttgcggcgatgcagaacagcgcccgctccacccgcgtggagttctgggccttcgac
ctgctctacctcgacgggcgtcctttgctgcgcgcggcctaccgggaccgccgccggctg
ctggcaacgcttgcccagggaaccggcttggtggtcaaagacctgctggccgccggcggc
gccgaggcactcgagcagtctcgccggcttggctgggaaggggtgatcgccaagaagtgg
gactcgccctaccagccggggcgccgctcaccggcgtgggtcaaggacaagcattggcgg
acccaggaggtggtgatcggcggctggcgcgccggcgagggtgctcggggcggggggatc
gggtcgctgttgatggggattcccgagggcgacggtctgcggttcgtgggccgggtgggc
accggcttcaccgagcgcgcactggcagcgctgaagaaaaagctgacgcccaccgataaa
tcgcccttcgatgcgccgctgcctcgcgctgatgccaagggcgttaccttcgttcgaccg
accctggtgggggaggtgcgctacagcgagcggaccggcgacggtcggctgcggcaaccg
agctggcgtggtctgcggcccgacaagacgcccgacgacgtggtgagcgaggattga
DBGET
integrated database retrieval system
