Methylobacterium nodulans: Mnod_7647
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Entry
Mnod_7647 CDS
T00839
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mno
Methylobacterium nodulans
Brite
KEGG Orthology (KO) [BR:
mno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mnod_7647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mno03400
]
Mnod_7647
Enzymes [BR:
mno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mnod_7647
DNA repair and recombination proteins [BR:
mno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mnod_7647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
ARA70
Motif
Other DBs
NCBI-ProteinID:
ACL62378
UniProt:
B8IQT3
LinkDB
All DBs
Position
complement(7743772..7745406)
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AA seq
544 aa
AA seq
DB search
MSTAPGQTEDTLASYNRKRDFTQTAEPKGRVTSGGGHRFVVQKHAARRLHYDFRLELDGV
LLSWAVARGPSLDPADKRLAVRTEDHPVAYADFEGTIPQGNYGAGTVMLWDRGTWSPDGD
PHEAIKNGRLRFTLHGERMRGAWLLIRMKGSKRENWLLRKLEDDEANRDSDLTQSHTSSI
TTGRSLEQIAAGERTSTRRSSNLAASRPMPLEHRAEPPIPVSLRDDKPADEVRAEHAQPV
VQATKRARARAAERAMISHGVRITSPDRQPYPQAKVSKRDLVAYYEQVSVVMLPHISGRP
LTLIRCPRGVDARCFVQQHAAPGFPEAVRTVSITEASGETQNHIYVEDLAGILACVQIGA
LEFHGWGARAGALEVPDRLVLDLDPDPAVAFGAVVDAALFIRDRLLEDGLSSWPMLSGGK
GVHVIVPLTGATWPAVSAYAKQLAQAMEKQAPERFTAEMAKTDRSGRIFIDYLRNQRGAT
AVMPYSTRAKASASIAMPLDWDRLGQTTSAQAYTVHDVLEKGLPEVAEQASAPQRLPRSS
PGGE
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagcaccaggccagacagaagacactctcgcctcctacaacaggaagcgagac
ttcacacagacggcagagccgaaggggcgcgtgacaagcgggggtggccaccgctttgtc
gtccagaagcatgcggcgaggcgcctgcactacgacttccgcctggagctcgacggtgtt
ctgctcagttgggccgtcgcgcgcgggccgagtctcgaccccgctgacaagcggctcgcg
gtccgcacggaggatcatcccgtagcctatgccgacttcgaaggaaccatcccgcagggc
aactacggcgcagggacggtgatgctgtgggatcgcggaacgtggtcgcctgacggagat
ccacacgaggcaatcaaaaacggcaggctgcgcttcactcttcatggagagcgcatgcgc
ggcgcttggctgctgatccgaatgaagggtagcaagcgcgagaactggctcctgcgcaag
cttgaggacgacgaggcgaacagggacagcgatctcactcagagccatacatcgagcatc
acgacgggccgctctttggagcagatcgctgcgggagagcgcacctcgacacgacgctcg
tcaaaccttgccgcatcgcggcccatgccgctcgagcatcgcgccgagccaccaattcct
gtcagcttgcgcgatgacaagcccgcggacgaggtgagggctgagcacgcgcagccagtc
gtgcaggccaccaagcgtgcaagagcgagagcagccgaaagggcgatgatctcgcacggc
gtgcggatcaccagccccgaccgtcagccgtacccgcaggccaaggtcagcaagcgcgat
ctcgtggcctactacgagcaggtctctgtggtgatgctgccgcacatctcaggccggccg
ctcacgctgatccgctgcccgcgcggcgttgatgcacgctgcttcgtccagcagcacgcc
gcccctgggttcccggaggccgttcggacggtgagcatcaccgaggcgtctggcgagacg
cagaaccacatctacgtcgaagacttggcgggcatcttggcctgcgtgcagatcggagcc
ctcgagtttcacggctggggagcgcgtgccggcgcgcttgaggtgccggatcgtctcgtc
ctcgacctcgatcccgatccggccgtggcgttcggcgcagtggtggatgccgctctgttc
attcgcgaccgtctgctggaggacggcctgagctcatggccgatgctgtcgggtggcaaa
ggcgtacacgtgatcgtgccgctgaccggggcgacgtggccggcggtcagtgcttatgca
aagcagctggcgcaggcgatggagaaacaggcgcccgagcggttcacggcggagatggcg
aagaccgatcggtccggacggatcttcatcgactacctgcgcaaccagcgtggagcgacc
gccgtgatgccctactcgacgcgagcgaaggccagcgcgtcgattgcgatgccgctcgac
tgggaccggctcgggcagaccacgtccgctcaagcctacacagtccatgatgttctcgag
aaagggctgcccgaggtggccgagcaggcaagtgcgccgcagcgactgccgaggagttcc
ccaggcggagagtag
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