Mustela nigripes (black-footed ferret): 132002575
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Entry
132002575 CDS
T09425
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132002575 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132002575 (LIG4)
Enzymes [BR:
mnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132002575 (LIG4)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132002575 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
132002575
NCBI-ProteinID:
XP_059233620
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All DBs
Position
15:complement(80996208..81005282)
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AA seq
974 aa
AA seq
DB search
MTSRTGAVTAAALIIFMTSGTLSPAPPLQGRLRLRPEQLAEQPSAGGFRFGDRSRGCASG
RPCARLRSGARASESAGRAGDLCSTLERIQRSKGRAEKIRHFREFLDSWRRFHNALHKNQ
KDVKDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKGGKDALKLLNYRTPTG
TRGDAGDFATIAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSARRKDLIKKSLLQLISQ
SSALEQKWLIRMIVKDLKLGFSEQSVFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSD
ISITLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKQGGEYQYFSRNGFN
YTDQFGKSPQEGSLTPFVHSAFKTDIQICILDGEMMAFNPNTQTFMQKGTKFDIKRMVED
SDLQTCYCVFDVLMVNNKKLGRETLKKRYEILTSVFTPIPGRIEIVQKTQAHTQKEVIDA
LNEAIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLVDELDILIVGGYWGKGSRG
GMMSHFLCAVAETPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFNRKAPPSS
ILCGTEKPEVYIEPCHSVIVQVKATEIVPSDMYKTGCTLRFPRIERIREDKEWHECATRD
GLEQLRGKASGKLASKHLYVSDGDEPQEKKRKAAPKMRKVIGIIEHLKAPNLSNVNKVSN
IFEDVEFCVMNGTDGHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSDK
HDVVKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFVDTDLNRLKEV
FSGIKNPSAQAPGEMASVIADLEHRYSWDGCPLSMFRHCVIYVDMYAVVNDLSTSIVGTR
LAVTALELRFHGAKVVSHLAQGVSHVIVGEDQSRVADLKAFRRTLKRKFKILQQDWVTDS
IDKCELQEENRYLV
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacggactggcgctgtgacggcggccgctctcatcatcttcatgacgtcaggg
accctttcccccgcccccccccttcaggggcgattgcgtctgcgcccggagcagctggcg
gaacagccctcggccggcggcttccggttcggtgaccgctcccggggctgcgcttccggt
cggccgtgtgcgcggctgcgcagcggggcgcgggcgtcggagtccgcgggccgcgcgggc
gacttgtgttcaacgttagaacgaatacagagaagtaaaggacgagcagaaaaaatcaga
cacttcagggaatttttagattcttggagaagatttcacaacgcccttcataagaaccaa
aaagatgtcaaagactctttttacccagcaatgagacttattcttcctcagctggaaaga
gagagaatggcgtatggaatcaaagaaaccatgcttgctaaactttatatcgaattgctt
aatttgcctaaaggaggaaaagatgcccttaaacttttaaattacagaacgcccaccgga
actcgtggagatgctggtgactttgcaacaattgcatattttgtgttgaaaccaagatgt
ttgcagaaaggaagtttaaccatacagcaggtaaatgacattttagactcaattgccagc
aataattctgccagaagaaaggacctaattaagaagagtcttcttcagctaataagtcag
agttcagcactggaacagaagtggcttatacggatgattgtaaaggacttaaaactcggt
ttcagcgaacagtctgtattttctgttttccataatgatgctgccgagttgcataacgtc
accacagatctggaaaaggtctgtaggcagctgcatgacccttccgtaggactcagtgac
atctccatcactttattctcagcctttaaaccgatgctggctgctatagcagacattgag
cggatcgagaaggacatgaaacaccagagcttctacattgaaaccaagctcgatggggag
cgcatgcagatgcacaagcagggtggggagtaccagtacttctcccgaaacggattcaac
tacacggatcagtttggcaaatctccacaggaaggttctctcacaccgttcgttcacagt
gctttcaaaacagacatacagatctgtatcctggatggcgagatgatggccttcaacccc
aacacacagactttcatgcaaaaggggactaagtttgatatcaaaagaatggtggaggat
tctgatctgcagacttgttactgtgtgtttgatgtgctgatggttaataataaaaagctg
ggacgtgagaccctgaagaaaaggtatgagattcttaccagtgtttttacaccaataccc
ggtaggatagaaatagtgcagaagacacaagctcatactcagaaagaagtgatcgatgct
ttgaatgaagcaatagataaacgggaagaggggatcatgattaaacaccctctgtcgatt
tacaagcccgacaaaagaggcgaaggatggctgaagattaaaccagagtacgtggacggg
ctggtggatgagctggacatcctaatcgtcgggggctactgggggaagggttcccgaggg
ggcatgatgtctcatttcttatgtgccgtagcagagacaccgcctcctggtgaaaaacca
tcggtgtttcatactctgtgccgtgttggttcaggttacaccatgaaagaactgtacgat
ctgggtttgaagttggccaaacactggaagcctttcaataggaaagctccaccgagcagc
attttatgtggaacggagaagccagaggtgtacattgagccctgtcattctgtcattgtt
caggttaaggccacagagatcgtccccagcgatatgtataagactggctgcacactccgt
tttccacgaatcgagaggatcagagaagacaaagagtggcatgagtgcgccacccgcgac
gggctggagcagcttcgcgggaaagcctcgggaaagctggcttccaaacacctgtacgtc
agcgacggcgatgagccacaagaaaagaagcggaaggctgccccgaagatgaggaaagtt
atcggaattattgagcacttaaaagctcccaacctttctaatgtaaacaaagtgtctaat
atatttgaagatgtggagttctgtgtcatgaacggcacggatggccatccgaagcccgac
ctggagaacagaattgccgaatttggtggttacatagtacagaatccaggcccagacacg
tactgcgtcattgccgggtccgagaacatcagagtgaaaaacataatttcttcggacaaa
catgatgtcgtcaagcccgagtggctgttggagtgttttaagaccaaaagctgcgtgccg
tggcagcctcgctttatgattcacatgtgcccgtcgacaaaagagcattttgcccgtgaa
tacgattgttacggtgacagttattttgttgatacggatttgaaccgactgaaggaagtg
ttctcaggaattaaaaatcccagcgcacaagctcctggagaaatggcttctgtgattgct
gatttagagcaccggtattcctgggacggctgccctctcagtatgtttcggcactgcgtt
atttacgtggacatgtatgctgttgttaatgacttgagtaccagcatcgtgggaacaaga
ttagccgttacagctttggagcttcggtttcatggagccaaagtggtttctcatttagct
cagggagtgtctcatgtcatcgttggggaggatcagagtcgtgtggcagatttaaaagct
tttcgaagaactcttaagagaaagtttaaaatcctgcaacaagattgggtcactgattca
atagacaagtgtgaattgcaggaggaaaatcggtacttggtttaa
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