Mustela nigripes (black-footed ferret): 132005640
Help
Entry
132005640 CDS
T09425
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03030
DNA replication
mnp03410
Base excision repair
mnp03420
Nucleotide excision repair
mnp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132005640 (LIG1)
03410 Base excision repair
132005640 (LIG1)
03420 Nucleotide excision repair
132005640 (LIG1)
03430 Mismatch repair
132005640 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mnp03032
]
132005640 (LIG1)
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132005640 (LIG1)
Enzymes [BR:
mnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132005640 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
132005640 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
132005640 (LIG1)
DNA replication proteins [BR:
mnp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
132005640 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
132005640 (LIG1)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
132005640 (LIG1)
NER (nucleotide excision repair)
Other NER factors
132005640 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
132005640 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
132005640
NCBI-ProteinID:
XP_059239007
LinkDB
All DBs
Position
17:6321203..6359588
Genome browser
AA seq
915 aa
AA seq
DB search
MQRSIRSFFYPKNEGKVKKPEKETSNSVRETEPPPKMALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTLPESSPPLSSTSPVDISPAGIPK
RRTARKQLPKRTIQDVLEEQAKDEDREAKRKKEEEAETPPESLTEPEVTQKKEAEGGEQP
VTSPEHPETSADSPPDSTSEPEVARKQEAQEEDPAKPPPRAPKTVSSFFAPRKPATKKEG
KEEGPGTPRQEEAKGPPDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSA
RLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGR
QLESVKAEAAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFTKFRDIARLAGSASTAKKM
DVIKGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPGIVDAG
KGRTAEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCKLSPGVPLKPML
AHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTSKYPDIISR
IPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIY
LNGQSLVREPLSRRRQLLRENFVQTEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMV
KTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYD
EESEELQAICKLGTGFSDEELEEHHHRLQALVLPSPRPYVRVDGAVAPDHWLDPSAVWEV
KCADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSAQVASLYRKQSQIQ
NQQGADLDSDPEDFY
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcaggtcatttttctaccccaagaatgagggcaaagtgaaaaagcca
gagaaggagacctccaacagcgtcagagagacggagccgcctccaaagatggcactgaag
gagcggaatggagaggtgcctgagagcgattctccagtgaagaggccggggcggaaggtg
gcccgggtcctgggcagtgaaggggaggaggaggatgaggccctcacgccctccaaaggc
cagaagcctgccccgggctctccacaagtctcccctcccagccctgtcacattgcccgag
agcagccctcccctctccagcacctctcctgtggacatctccccagcagggatcccgaag
cggcggacggctcggaagcagcttcctaagcggacaatccaggatgtcctggaggagcag
gccaaggacgaggacagagaggccaagaggaagaaggaggaagaagctgagaccccacca
gaaagcctcacagagcctgaagtgacccaaaagaaagaagcagagggaggggagcagccc
gtgacgtcccctgagcacccagagacctcggcagattccccgccggacagcacctcggag
cctgaggtggccaggaagcaggaggctcaggaggaggacccagccaagccaccccccaga
gctcccaagacggtcagcagcttcttcgccccccggaaaccggcaaccaagaaagaaggg
aaagaagagggacctggcactccaagacaggaggaggccaagggacccccggaccccccc
agctacaatcctgccaagaacaactaccatcccatcgacgatgcgtgctggaagccaggc
cagaaggttccttacctggctgtggcccggacctttgagaagattgaggaagtttctgct
cggctccggatggtagagacgctgagcaacttgctgcgttctgtggtggccctgtcccct
ccagacctcctacccatcctctacctcagcctcaaccgcctcgggccgccccagcagggc
ctggagcttggtgttggtgatggcgtcctcctcaaggcggtggcccaggccacagggcgg
cagctggagtctgtcaaggccgaggcagccgagaagggcgacgtggggctggtggcggag
agcagccgcagcacccagagactcgtgctgcccccgcccgctctcaccgccgccggagtc
ttcaccaagttccgagacattgcccggctggctggcagcgcttccacagccaagaagatg
gacgtcatcaaaggcctatttgtcgcctgccgccactcagaagcccgatacatcgccaga
gccctgagcggacggctgcgtctcgggctagcagagcagtcggtgctagccgccctcgcc
caggccgtgagcctcacgccccctggccaagaattccccccgggcattgtggatgctggg
aaaggcaggacagcagaggcccgaaagatgtggctggaggagcagggcatgatcctgaag
cagacgttctgtgaggtgcccgacctggaccggatcatccctgtgctgctggagcatggc
ctggagcacctcccagagcattgcaagctgagcccaggggttcccctgaaaccgatgctg
gcacaccccacccgcggagtcagcgaggtcctgaaacgcttcgaggaggcagctttcacc
tgcgagtacaaatatgatgggcagagggcacagatccatgtcctggaaggcggggaggtg
aagatcttcagcaggaatcaggaagacaataccagcaagtacccggacatcatcagccgc
atccccaagattaaactcccatcagtcacatccttcatcctggacacagaagccgtggct
tgggaccgggaaaagaagcagatccagccattccaagtgcttaccacccgcaaacgcaag
gaggtggatgcagcagaaatccaagtgcaggtgtgtctgtatgccttcgacctcatctac
ctcaatggacagtccctggtgcgcgagccactttcccgacgccggcagctgctccgggag
aactttgtgcagacggagggcgagtttgtcttcgccacttccctggacaccaaggacacg
gagcagatcgccgagttcttggagcagtctgtgaaagactcctgtgaggggctgatggtg
aaaaccctggatgtcgacgccacctacgagatcgccaagaggtcacacaactggctcaag
ctgaagaaggactacctcgatggtgtgggcgacaccctggacctcgtggtgatcggcgcc
tacctgggccgtggcaagcgggccggccgctatgggggcttcctgctggctgcctacgac
gaggagagtgaggagctccaggccatatgcaagctcggaaccggcttcagtgacgaggag
ctggaggagcaccaccacaggctccaggccctggtgctgcccagcccgcgcccctatgtc
cgggtggacggcgccgtggcccctgaccactggctggaccccagcgccgtatgggaggtg
aaatgcgctgacctgtccctgtcccccatctaccccgctgcccggggcctggtggatggt
gagaaggggatctcccttcgcttccctcggtttatccgcgtccgtgaagacaagaagcca
gaggaggccaccaccagcgcccaggtggcctcgctgtacaggaagcagagtcagattcag
aatcagcagggcgcggatctggactccgacccggaagatttctactag
DBGET
integrated database retrieval system
