Mustela nigripes (black-footed ferret): 132011200
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Entry
132011200 CDS
T09425
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03013
Nucleocytoplasmic transport
mnp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132011200 (UPF1)
03015 mRNA surveillance pathway
132011200 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnp03019
]
132011200 (UPF1)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132011200 (UPF1)
5.6.2.5 RNA 5'-3' helicase
132011200 (UPF1)
Messenger RNA biogenesis [BR:
mnp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132011200 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132011200 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
132011200
NCBI-ProteinID:
XP_059245454
LinkDB
All DBs
Position
2:14499374..14537071
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AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgcttggcgccgacacacagggctcagagttcgagttcaccgacttcactctc
cctagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggttggcgcgggcgcgggagctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggctgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaacttcgaagaagatgaggaggatacctattacactaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgcggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaggccgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcactgcc
cagcagatcaacaagctggaggagctctggaaggaaaatccttctgccaccttggaggac
ctggagaagccaggtgtggacgaggagccgcagcacgtgctcctgcggtatgaggacgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggctgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggggatgagatatgtctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggt
gatgagatcgccattgagcttcggagcagtgtgggtgcgcctgtggaggtgacgcataac
ttccaggtggatttcgtgtggaagtccacctcatttgataggatgcagagtgcattgaaa
acgttcgctgtggatgagacgtctgtctcgggctacatctaccataagctgctcgggcat
gaggtggaggacgtgatcatcaagtgccagctgcccaaacgcttcacggcacaggggctc
cccgacctcaaccactcccaggtttatgctgtcaagactgtgctgcagagaccgctgagt
ttgatccaaggaccaccaggcacagggaagacagtgacctctgccaccatcgtctaccat
ctcgcgcggcagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggac
cagctgactgagaagatccaccagactgggctgaaggtcgtgcggctctgtgccaagagc
cgtgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctgaaggacgagacgggggagctgtcc
tctgctgacgagaagcggtaccgggccctgaagcgcactgccgagagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggcttgccaagatg
cagttccgctccattttaattgacgagagcacccaggccactgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggggatcactgccagctgggccct
gtggtgatgtgcaagaaagcggccaaagcgggactgtctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgccccatccgcctgcaggtccagtaccggatgcatcccgcactc
agcgccttcccttccaacatcttctacgagggctccctccagaacggcgtcactgcagcg
gaccgagtgaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacgaagttgctgaaggcaggggccaagcccgac
cagatcggcattatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaatgaccccaggcggcttaatgtggccctgaccagagcgaggtac
ggggtcattatcgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgcgag
agcctcatgcagttcagcaagcccaggaagctcgtcaacaccatcaatccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccatcatccccggatcggtctacgat
cgcagcagccagggccggccctcaaacatgtacttccagacccacgaccagattggcatg
atcagcgcgggccccagccacgtggctgccatgaacattcccatccccttcaatctggtc
atgccccccatgccaccgccagggtacttcggacaagcaaacgggccggccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgtcagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaagacgtggcgtcacagcca
ttctcccagggcgccctgacccagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggtgatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacctaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
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