Massilia sp. NR 4-1: ACZ75_08315
Help
Entry
ACZ75_08315 CDS
T04026
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mnr
Massilia sp. NR 4-1
Pathway
mnr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mnr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACZ75_08315 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnr03400
]
ACZ75_08315 (ligD)
Enzymes [BR:
mnr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACZ75_08315 (ligD)
DNA repair and recombination proteins [BR:
mnr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACZ75_08315 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKU21481
UniProt:
A0A0K1JWV9
LinkDB
All DBs
Position
complement(2213853..2216351)
Genome browser
AA seq
832 aa
AA seq
DB search
MKDSLKTYKAKRDFSITPEPAEGGVQGEALSFVIQKHWSSRLHYDFRLELDGAMKSWAVP
KGPSYDTHDKRMAVHVEDHPISYNDFEGTIPPKQYGAGKVIIWDKGSWHPLGDPRQGYRQ
GNLKFELRGHKMHGHWVLVRMKGRGEKQEPWLLIKENDDYARPAAEFSVVDEMPDSVKDL
GMPASTGDKAVPRAAALPTELAPQLATLVDAPPTEPEQWLFEVKYDGYRLLARVDGRKIR
LMTRNGNDWTHKLELLRAELASMKLPAGWYDGEIVVHNENGLPDFGLLQQAFDGERTESI
AYFLFDVPYLNGYDLRHLPFEQRRELLQTVLEKSRSDKVRLSAILDAQAADIVKAACSLG
LEGVIGKRRDAPYVSRRSAGWIKLKCGQRQEFVIGGYTDPRGARTGIGSLLLGYFDEGGK
LHYAGNVGSGFNESALRELKARLKRLHAADSPFAASRSIGKKAHWVKPALVAEVSFGEWT
RSGSVRHAVFQGLRSDKQASAVRRERPAHTEDIVTDKPQAKARAAQGEGGASAPLHGKLP
ASLKISNPGRVIDAASGSSKIDLVRYYALVAPLMLEHLKGRPVALVRAPAGVGGELFFQK
HAESGKLAGVKSLPQELDPEHAPMLEVATARGLLESAQWNVVEFHTQNALGRNYEKPNRM
VFDLDPGEGVAWPQMQEAAQLLHAFLDELGLQAFLKTSGGKGLHAVVPIKPYYGWDTVKA
FSKAIVEHMAQTLPERFANKSGPKNRVGKIFIDYLRNGRSATTVCAWSARSRPGLGISVP
CGWDELAALRGADQWTIHNVHTRLDQGNTPWSGYGAGARGVAPAMKALGFTP
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgaaggactccctcaagacctataaagccaagcgcgatttttccatcacgccggaaccg
gccgaaggtggcgtgcagggagaagcgctgagcttcgtcatccagaagcattggtccagc
cgcctgcattacgacttccgcctggaactggacggcgccatgaaaagctgggccgttccc
aaaggccctagctacgacacgcacgacaagcgcatggccgtgcatgttgaagaccatccg
atttcctacaacgatttcgaaggcaccatcccgcccaaacagtatggcgcgggcaaggtc
attatctgggacaagggcagctggcatccgcttggcgacccgcggcagggctaccgccag
ggtaatctgaagttcgagctgcgcggccataagatgcatgggcactgggtcctggtgcgc
atgaaggggcgcggagaaaagcaggaaccctggctgctcatcaaggaaaacgacgactat
gcgcggccggccgcggaattcagcgtggtcgatgagatgccggacagcgtcaaagacctg
ggcatgccggcgtccaccggtgacaaggcggtgccccgtgccgccgcgctgcccaccgag
cttgctccccaactggcgacgctggtggatgcgccgcccaccgagccggaacagtggctg
tttgaagtcaaatatgacggctaccgcctgctggcgcgcgtcgatggccgcaagatccgc
ctgatgacccgtaacggcaacgactggacccacaagctggagctgctgcgcgccgaactg
gcgtcgatgaaactgccggcgggctggtatgacggcgagatcgtggttcacaacgaaaac
ggcttgcccgatttcggcctgctgcagcaggctttcgatggcgaacgcacggaaagcatc
gcttacttcctgttcgacgtcccttacctgaatggctatgatttgcgccacctgccgttc
gaacagcgccgcgagctgttgcaaaccgtgctggaaaaaagccgctcggacaaggtgcgc
ctgagcgccatactcgatgcccaagccgccgatatcgtgaaggccgcctgcagcctgggg
ctggaaggcgtgatcggcaagcggcgcgatgcgccctatgtatcgcgccgttcggccggc
tggatcaagctcaaatgcgggcagcgccaggaattcgtgatcggcggctataccgatccg
cgcggcgcgcgcaccggcatcggttctctgctgctcggctatttcgacgaagggggcaag
ctgcattatgccggcaatgtgggcagcggcttcaacgaaagcgcgctgcgcgaactgaag
gccaggctgaaaaggctgcatgccgccgacagccctttcgccgccagccgcagcatcgga
aagaaagcgcactgggtcaagcccgcactggtggccgaagtcagttttggcgaatggacg
cgcagcggatcggtgcgccacgccgtattccaggggctgcgcagcgacaagcaggccagc
gccgtccggcgcgagcgtcccgcgcatacggaggatatcgtgacagacaagccgcaggcc
aaggcgagggccgcgcaaggggagggcggcgcatccgcaccgctgcacggcaagctgccc
gcatcgctcaagatcagcaatcccggacgcgtgatcgacgctgccagcggcagcagcaag
atcgacctggtgcgctactacgccctggtggcgccgctgatgctggaacatctgaaaggc
cgcccggtggccctggtgcgcgcgccggcgggcgtgggtggagagctgttcttccagaag
catgccgaaagcggcaagctggccggcgtcaaatcgctgccgcaggagctggacccggag
catgcgccgatgctggaagtcgccaccgcgcggggactgctggaatcggcgcagtggaat
gtggtcgaattccatacccagaatgcgttgggccggaactatgaaaagcccaaccgcatg
gtgttcgacctcgatcccggcgagggtgtggcatggccgcagatgcaggaagcggcgcag
ctgctgcatgccttcctcgatgaactgggcctgcaggccttcctcaaaaccagcggcggc
aagggtttgcatgcggtcgtgccgatcaagccgtattacggctgggacacggtcaaggcc
ttcagcaaggccatcgtcgagcatatggcgcagacgttgcccgagcgtttcgccaacaag
agcggaccgaaaaaccgcgtcggtaaaatcttcatcgactatctgcgcaatggccgcagc
gccaccaccgtgtgcgcctggtccgcacgcagccgtccgggactgggtatttccgtgcct
tgcggctgggacgagctggcggcattgcgtggcgccgaccagtggaccatccataacgtc
cacacgcggctggaccagggcaatacgccctggtccggatatggcgcgggcgcgcgcggc
gtcgccccggccatgaaagcgctgggctttacgccttag
DBGET
integrated database retrieval system