Macrobrachium nipponense (oriental river prawn): 135212921
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Entry
135212921 CDS
T09903
Name
(RefSeq) ATP-dependent RNA helicase Ddx1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnz03041
]
135212921
03016 Transfer RNA biogenesis [BR:
mnz03016
]
135212921
Enzymes [BR:
mnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135212921
Spliceosome [BR:
mnz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135212921
Transfer RNA biogenesis [BR:
mnz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135212921
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Motif
Other DBs
NCBI-GeneID:
135212921
NCBI-ProteinID:
XP_064102732
LinkDB
All DBs
Position
42:complement(438470..845817)
Genome browser
AA seq
736 aa
AA seq
DB search
MAAFEEMGVLPEIAKAVEEMDWTLPTDVQNEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDIQLGKTSKVNKEASPHWLMSFFDRDPGLAVTPDGLRCQSRDPKLWQGVRG
TKGVSGKGKYYYEATVSDEGLCRVGWSTPQAALDLGTCKNGFGFGGTGKKSNCRQFDDYG
ESFGLKDVIGCYLDLDNMEILYSKNGSDLGKAFTLRNEFRNATFYPSVVLKNAEMSFNFG
ATAFQHPPKSGYVALCQASKECTVISGVKGGGDKTNKVQKNAPQAVIIEPSRELAEQTLK
QVTLFSKHLENPVVRDLLVVGGIPVKDQIAALNAGVDIVCGTPGRMEELINSGQLSLQAC
KFFVLDEADGLLKQGHERLVNGIYNSIPKITSDGKRLQMVVCSATLHSFEVKRMAERLMH
FPTWVDLKGEDAVPETVHHVVVTIDPRNDNSWTSLRRHVQTDGVHAKDNVRPGNSTPETL
SEAVKMLKGEYCIRAIDTHNMDQGIIFCRTKLDCDNLERYFNQLGGGPRNKGNKYSCVCL
HGDRKPNERKANLQTFKDGEVRFLICTDVAARGIDVGGLPFIINVTLPDEKSNYVHRIGR
VGRAERMGLAISLVSAVPEKVWYHGEWCPSRGRGCYNTQLTTERGCCTWYNEPQYLADIE
EHLGVTIQQVDKEMKVPVDEFDGKVIYGEKKANAGSGYQTHVEQLAPAVQELAELETQTQ
MIYLKRQYGKEYPWTR
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcagccttcgaagaaatgggcgttttgccagagattgccaaggctgtggaggaaatg
gattggactttgccaacagatgtccagaatgaggcaatacccttgattttgggtggtggt
gatgtcctcatggcagctgaaacaggtagtggcaagacaggtgccttctgtcttcccatc
ctgcagattgtatgggaaaccctgaaggacatacaattgggtaaaacctcaaaggtcaac
aaagaggcatctcctcattggttaatgagcttctttgatcgagatcctggcttagcagta
acccctgatgggctccgttgtcagtcgcgcgatcccaagttatggcagggtgtgcgaggt
accaaaggcgtaagtggaaaggggaagtattattatgaggcaactgtttctgatgaagga
ttatgcagagtgggatggtccacccctcaggcagctttggatcttggaacatgtaagaat
ggatttggttttggtggaacaggaaagaaatcaaattgtcgtcaatttgatgattatgga
gaatcgttcggccttaaagatgtcattggttgttacttggatcttgacaacatggagatt
ctttatagcaaaaatggctctgaccttggcaaggcctttactctaaggaatgaattcagg
aatgccacattttatccttctgttgtgctaaagaatgcagagatgtccttcaattttggt
gctacagcctttcagcaccctcctaagtcaggttatgtagccctttgccaagccagcaag
gaatgcactgtcatatcaggtgtgaagggaggtggtgataaaaccaacaaggttcagaaa
aatgctcctcaggcagtgattattgagccatctcgagaactggcagagcaaacacttaag
caggtgacccttttctcgaaacacttggagaacccagttgtacgagacttactggtagtt
ggtggtattccagtgaaggatcagattgcagctttaaacgctggagttgacatagtatgt
ggcactccagggagaatggaagagctcatcaattctggccagctgtcccttcaagcttgt
aaattctttgttttagatgaagctgatggtcttttaaagcagggccatgagcgtttagtc
aacggcatttataattcaatcccaaagatcacaagtgatggtaagagactccagatggtt
gtgtgttctgctactctccattcttttgaagtgaaacggatggctgaacgcttgatgcac
ttcccaacctgggttgatctgaagggagaagatgctgttcctgaaactgtccatcatgtt
gttgtgacgattgatccccgaaatgacaactcgtggacttcccttcgacgccatgtccag
actgatggcgtgcatgccaaagataatgttcgacctgggaacagcactcctgaaacgttg
agtgaagctgtaaagatgttaaagggtgaatactgtataagagctattgatacccacaac
atggaccaagggataatcttctgtcgaacaaagttagattgcgacaatttagaacgatac
tttaaccagctaggtggtggacccagaaataaaggtaacaaatactcctgtgtttgcctt
catggagaccgtaaacccaatgagcgtaaggccaacttgcaaacatttaaggacggtgaa
gttcgttttctcatctgcactgatgttgctgctcgaggaattgatgttggtgggcttcct
tttatcataaatgtaactttaccagatgagaagagcaattatgttcatcgcattggtaga
gttggtagggctgagagaatgggtttggccatctcccttgtttctgctgtgccagagaag
gtgtggtatcatggtgagtggtgtccctctcgtggacgtggctgttacaatacacagctt
acaactgaacggggttgttgcacatggtataatgagccacagtatttagctgatattgaa
gaacatcttggagttacaattcagcaggtggacaaagagatgaaagtgcctgttgatgaa
tttgatgggaaagttatttatggagagaagaaagcaaacgcaggctccggctaccagacc
catgttgagcaactagctccagctgtccaagaattagcagagctggaaactcaaacacag
atgatttacctaaaacgacaatatggcaaagaatatccttggacacgttag
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