Microvirga ossetica: BB934_16235
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Entry
BB934_16235 CDS
T05139
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
moc
Microvirga ossetica
Pathway
moc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
moc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BB934_16235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
moc03400
]
BB934_16235
Enzymes [BR:
moc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BB934_16235
DNA repair and recombination proteins [BR:
moc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BB934_16235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANY79583
UniProt:
A0A1B2EHX1
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All DBs
Position
complement(3462703..3465288)
Genome browser
AA seq
861 aa
AA seq
DB search
MARAKKPATSGKTASRRSAADPARRSAPLKAYAAKRNFAATPEPKGKTVRRQADRFCIQR
HDARRLHFDLRLELDGVLKSWAVTRGPSLVSGEKRLAVHTEDHPIEYLTFEGGIPRGEYG
GGTMIVWDTGTWTPIGDPHRGYAKGHLEFELAGQRLNGRWHLVRMRAKPRESKEQWLLIK
SDDEYAKPKDEPEIVSVELTSILSGKTNGDLAASDEIRSDHAERAKAAGTKPRPVPELAR
MPKARKGLLRTFIEPSLATLVDEAPHGDEWIHEIKFDGYRLQARIDGKNVKLLTRKGLDW
TAKFKPVAAALRDLKLGSALLDGELVVEDKTGLSSFASLQADLKSGRTDRMVFNAFDLLY
LDGYDLTKLPLIERKTFLATLLEDAPAGGILRYSSHLEGDGETMIRHACRLGLEGIVSKH
RDRPYLASRGMHWQKTKCTQRQEFVIAGYVPSSVSPKAIGSLVLGVYEDKRLVHVGRVGT
GFSATLARDLWTDLERLKRPASPFSAALSRDAARGVRWVKPELVAEVEFRGWTTDGILRH
ASYKGLREDKDPSEIVRETAKSALSRANAPALSSFNLTHPDRMLWPDTGLTKQGLADYYA
DIAEWILPHVANRPLSLVRCPSGIEGSCFFQKHAWNGMSKAVQHRAIDGEDTLFIDDLEG
LIALVQSGVLEIHAWGSSMENPETPDRIVMDLDPAEDVPWTALIDAALEVRERLGNAGLE
SFVKTTGGKGLHLVAPLRPKAGWDEVKSFAQSLAETMAGDSPDRYVATMSKRARAGKIFV
DYLRNGRGATAVAPYSTRARSGAPVSTPLAWSELSASMRPDHFTVANLPTRLAHLKSDPW
ADLPELDQGLPQRKGRSRKRG
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgcaaagaagcctgcaacctcgggtaaaaccgcctcgcgacgcagtgccgcc
gatcctgcacggcgctccgctccgctcaaggcatacgcggcgaagcgaaacttcgcggca
actcctgaaccgaaaggcaagaccgttcggcggcaggccgaccgtttctgcattcagagg
cacgatgcgcgccgcctgcatttcgacctacggctcgagctcgacggggtcttgaaaagc
tgggccgtgacgagaggcccgagccttgtttcaggcgagaagcgtctcgcagtccatacg
gaagaccatcccatcgagtatctgaccttcgaaggcggcatcccgcgcggcgagtatggc
ggcggaacgatgatcgtctgggacacgggaacctggacgccgatcggcgatccccatcga
ggatatgcgaaggggcatctcgaattcgaattggcagggcagcggctcaacgggcggtgg
cacctcgtgcgcatgcgtgcgaagcctcgcgagagcaaggagcaatggctcctgatcaag
agcgacgatgaatatgcgaagcccaaagatgaaccggagatcgtatccgtcgaactgacg
tctatcctgtcaggtaagacaaacggcgatctggccgcgtcggatgaaatcaggtcggat
cacgcggagcgcgcgaaggctgcaggcacgaagccgaggcccgttcccgaactggctcgc
atgccgaaggcgcgcaaaggactgctgcgaaccttcatcgagcccagtctcgcaaccctg
gtcgatgaggctccccatggggacgaatggatccacgagatcaagttcgacggctatcgt
ctgcaggcgcggatcgacggcaagaacgtcaagctcctcacccgcaaaggcctcgactgg
acggcgaaattcaagcccgttgccgccgccctccgggacctgaagctcggctcggctctc
ctcgatggcgagctcgtcgtcgaggacaagaccgggctctcgagcttcgcgtccctgcag
gccgacctgaaatcgggtcggaccgaccggatggtcttcaatgcattcgaccttctctat
ctcgacggatacgatctgacgaaattgcctctcatcgagcggaaaacctttctggcgacg
ctgctggaggatgcgccggcaggcgggatcctgcgctacagctcgcatctcgagggcgac
ggcgaaaccatgatccgccatgcctgccgcctgggcctggaaggcatcgtctcgaaacat
cgcgacaggccctatctcgccagtcgcggcatgcattggcagaaaaccaaatgcacgcag
cgccaggaattcgtcatcgcgggttatgtgccctcgagtgtttcgccgaaggcgatcggt
tcgctcgttctcggcgtctacgaggacaagcgtctcgtccatgtagggcgcgtcgggacc
ggcttctccgcaacgctcgcgcgcgacctctggaccgacctcgaacggttgaagcggccc
gcctccccgttctcggcagcgctgtcgcgggacgcggctcgcggcgttcgctgggtgaag
cccgaactggtggccgaggtcgagtttcgaggatggaccactgacggcatcctccgtcac
gcctcctataaaggcctcagggaagacaaggacccgagcgagatcgttcgggagaccgcg
aaatccgcgctgtctcgcgcgaacgccccggcactatcgtccttcaatctcacccacccg
gaccggatgctctggccggatacggggctcaccaagcagggactggccgattactacgcg
gatatcgccgagtggatcctgccgcatgtcgcgaaccgccccctctccctggtccgctgc
ccatccggaatcgaaggttcctgctttttccagaagcatgcctggaacggcatgagcaag
gccgtgcagcatcgggccatagacggcgaggacaccttgttcatcgacgatctggagggc
ctgatcgcactggtgcaatcgggtgtcctcgagattcatgcctggggctcgtccatggaa
aatccggagacaccggatcggatcgtcatggacctcgatccggcggaggacgtgccttgg
accgctctgatcgacgctgcactggaggtaagggagcggcttggcaatgcgggcctggag
agcttcgtcaagacgaccggcggcaagggattgcatcttgtcgctccgctccggcccaag
gccggctgggacgaggtgaagtccttcgcgcaatcccttgctgaaaccatggccggcgac
agtccggaccgatacgtcgccaccatgtccaagcgtgcccgtgcgggaaagatcttcgtc
gactatctgcgcaacgggcgtggcgcgacagccgtcgcgccttactccacacgcgcccgc
tcaggtgctccggtgtcgacaccgctggcctggagcgagctctcggcgtccatgcgtccg
gaccattttaccgtcgcgaacctgccgacccgtctcgcccatctgaaaagcgatccctgg
gccgatcttccggagctggatcagggattaccgcaacggaagggacgttctcgaaagcgc
ggttag
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