KEGG   Microvirga ossetica: BB934_16235
Entry
BB934_16235       CDS       T05139                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
moc  Microvirga ossetica
Pathway
moc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:moc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BB934_16235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:moc03400]
    BB934_16235
Enzymes [BR:moc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BB934_16235
DNA repair and recombination proteins [BR:moc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BB934_16235
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ANY79583
UniProt: A0A1B2EHX1
LinkDB
Position
complement(3462703..3465288)
AA seq 861 aa
MARAKKPATSGKTASRRSAADPARRSAPLKAYAAKRNFAATPEPKGKTVRRQADRFCIQR
HDARRLHFDLRLELDGVLKSWAVTRGPSLVSGEKRLAVHTEDHPIEYLTFEGGIPRGEYG
GGTMIVWDTGTWTPIGDPHRGYAKGHLEFELAGQRLNGRWHLVRMRAKPRESKEQWLLIK
SDDEYAKPKDEPEIVSVELTSILSGKTNGDLAASDEIRSDHAERAKAAGTKPRPVPELAR
MPKARKGLLRTFIEPSLATLVDEAPHGDEWIHEIKFDGYRLQARIDGKNVKLLTRKGLDW
TAKFKPVAAALRDLKLGSALLDGELVVEDKTGLSSFASLQADLKSGRTDRMVFNAFDLLY
LDGYDLTKLPLIERKTFLATLLEDAPAGGILRYSSHLEGDGETMIRHACRLGLEGIVSKH
RDRPYLASRGMHWQKTKCTQRQEFVIAGYVPSSVSPKAIGSLVLGVYEDKRLVHVGRVGT
GFSATLARDLWTDLERLKRPASPFSAALSRDAARGVRWVKPELVAEVEFRGWTTDGILRH
ASYKGLREDKDPSEIVRETAKSALSRANAPALSSFNLTHPDRMLWPDTGLTKQGLADYYA
DIAEWILPHVANRPLSLVRCPSGIEGSCFFQKHAWNGMSKAVQHRAIDGEDTLFIDDLEG
LIALVQSGVLEIHAWGSSMENPETPDRIVMDLDPAEDVPWTALIDAALEVRERLGNAGLE
SFVKTTGGKGLHLVAPLRPKAGWDEVKSFAQSLAETMAGDSPDRYVATMSKRARAGKIFV
DYLRNGRGATAVAPYSTRARSGAPVSTPLAWSELSASMRPDHFTVANLPTRLAHLKSDPW
ADLPELDQGLPQRKGRSRKRG
NT seq 2586 nt   +upstreamnt  +downstreamnt
atggctcgcgcaaagaagcctgcaacctcgggtaaaaccgcctcgcgacgcagtgccgcc
gatcctgcacggcgctccgctccgctcaaggcatacgcggcgaagcgaaacttcgcggca
actcctgaaccgaaaggcaagaccgttcggcggcaggccgaccgtttctgcattcagagg
cacgatgcgcgccgcctgcatttcgacctacggctcgagctcgacggggtcttgaaaagc
tgggccgtgacgagaggcccgagccttgtttcaggcgagaagcgtctcgcagtccatacg
gaagaccatcccatcgagtatctgaccttcgaaggcggcatcccgcgcggcgagtatggc
ggcggaacgatgatcgtctgggacacgggaacctggacgccgatcggcgatccccatcga
ggatatgcgaaggggcatctcgaattcgaattggcagggcagcggctcaacgggcggtgg
cacctcgtgcgcatgcgtgcgaagcctcgcgagagcaaggagcaatggctcctgatcaag
agcgacgatgaatatgcgaagcccaaagatgaaccggagatcgtatccgtcgaactgacg
tctatcctgtcaggtaagacaaacggcgatctggccgcgtcggatgaaatcaggtcggat
cacgcggagcgcgcgaaggctgcaggcacgaagccgaggcccgttcccgaactggctcgc
atgccgaaggcgcgcaaaggactgctgcgaaccttcatcgagcccagtctcgcaaccctg
gtcgatgaggctccccatggggacgaatggatccacgagatcaagttcgacggctatcgt
ctgcaggcgcggatcgacggcaagaacgtcaagctcctcacccgcaaaggcctcgactgg
acggcgaaattcaagcccgttgccgccgccctccgggacctgaagctcggctcggctctc
ctcgatggcgagctcgtcgtcgaggacaagaccgggctctcgagcttcgcgtccctgcag
gccgacctgaaatcgggtcggaccgaccggatggtcttcaatgcattcgaccttctctat
ctcgacggatacgatctgacgaaattgcctctcatcgagcggaaaacctttctggcgacg
ctgctggaggatgcgccggcaggcgggatcctgcgctacagctcgcatctcgagggcgac
ggcgaaaccatgatccgccatgcctgccgcctgggcctggaaggcatcgtctcgaaacat
cgcgacaggccctatctcgccagtcgcggcatgcattggcagaaaaccaaatgcacgcag
cgccaggaattcgtcatcgcgggttatgtgccctcgagtgtttcgccgaaggcgatcggt
tcgctcgttctcggcgtctacgaggacaagcgtctcgtccatgtagggcgcgtcgggacc
ggcttctccgcaacgctcgcgcgcgacctctggaccgacctcgaacggttgaagcggccc
gcctccccgttctcggcagcgctgtcgcgggacgcggctcgcggcgttcgctgggtgaag
cccgaactggtggccgaggtcgagtttcgaggatggaccactgacggcatcctccgtcac
gcctcctataaaggcctcagggaagacaaggacccgagcgagatcgttcgggagaccgcg
aaatccgcgctgtctcgcgcgaacgccccggcactatcgtccttcaatctcacccacccg
gaccggatgctctggccggatacggggctcaccaagcagggactggccgattactacgcg
gatatcgccgagtggatcctgccgcatgtcgcgaaccgccccctctccctggtccgctgc
ccatccggaatcgaaggttcctgctttttccagaagcatgcctggaacggcatgagcaag
gccgtgcagcatcgggccatagacggcgaggacaccttgttcatcgacgatctggagggc
ctgatcgcactggtgcaatcgggtgtcctcgagattcatgcctggggctcgtccatggaa
aatccggagacaccggatcggatcgtcatggacctcgatccggcggaggacgtgccttgg
accgctctgatcgacgctgcactggaggtaagggagcggcttggcaatgcgggcctggag
agcttcgtcaagacgaccggcggcaagggattgcatcttgtcgctccgctccggcccaag
gccggctgggacgaggtgaagtccttcgcgcaatcccttgctgaaaccatggccggcgac
agtccggaccgatacgtcgccaccatgtccaagcgtgcccgtgcgggaaagatcttcgtc
gactatctgcgcaacgggcgtggcgcgacagccgtcgcgccttactccacacgcgcccgc
tcaggtgctccggtgtcgacaccgctggcctggagcgagctctcggcgtccatgcgtccg
gaccattttaccgtcgcgaacctgccgacccgtctcgcccatctgaaaagcgatccctgg
gccgatcttccggagctggatcagggattaccgcaacggaagggacgttctcgaaagcgc
ggttag

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