Microvirga ossetica: BB934_30980
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Entry
BB934_30980 CDS
T05139
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
moc
Microvirga ossetica
Pathway
moc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
moc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BB934_30980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
moc03400
]
BB934_30980
Enzymes [BR:
moc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BB934_30980
DNA repair and recombination proteins [BR:
moc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BB934_30980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ANY83265
UniProt:
A0A1B2ETF8
LinkDB
All DBs
Position
unnamed1:738031..740493
Genome browser
AA seq
820 aa
AA seq
DB search
MTIEPKAKRGKSQGDRFVVQKHDARRLHYDLRLELDGVLKSWAVTRGPSLVPGEKRLSVH
TEDHPLKYIDFEGVIPAGQYGGGTMLVWDQGYWIPEGDPREDYARGRLTFILEGERLRGR
WHLVRTRGKPGQKNEQWLLLKSDDEAARTTDDPGILEEKTTSLKSGRTIEELAGEGEIRI
DHAAREKVAKSRVGKARRLTKIGGAKKGILPAFVEPALAKLVESAPSGTNWLHEIKLDGY
RMQARIDGGEVQLLTRKGLDWTAKFKPVANALKELKLPSALLDGEIVVEDEAGVSSFSAL
QRELKGKGERFVYYVFDLLYLDGEDIRKANLSDRKAALRLLFDDLPQGGVVRFSDHIEED
GATLVRHACRMGLEGIISKRADRPYRSGRGEDWVKSKCTQRQELVIAGYLPSTASRKAVG
SLVMGVYEAGKLVPVGRVGTGFTAAVAGSLYKALSSMEIKASPFASRLPAAASRGVKWVR
PELVAEAEFRGWTHDGMVRLGSFQGLREDKAPRGVVRETAGEAPPAANPGATILEQAHLT
HPDRILWEDEGITKLGLAQFYTEIADWILPQIVNRPLSLLRCPGGSQKECFFQKHAWAGL
DEDLIQRIRVGDDEAVAIRDLGGLLALVQAGVLEIHPWGSTLKNPEKPDRLVFDLDPGEG
VSWDAVVQGATDVRDYLEGLNLVSFVKTSGGKGLHVVVPLRPKASWDEAKAFAAGVASAM
TKASSALYTNTMAKRARTGRIFIDYLRNGRGATAVAAYSTRARAGASVSTPLAWKELPTI
RSGNQYRISNLAARLSHLQDDPWSDFGNVDQVIPKGTRPR
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atcacgatcgaacccaaggcgaagaggggcaagtctcagggtgaccgcttcgtggttcag
aagcatgatgctcgccgcctgcactatgacctgcggcttgagctcgatggcgttctcaag
agttgggcagtaacaagaggcccgagcctggttccaggtgagaagcgcctttcggtccac
accgaggaccacccgctgaaatacatcgacttcgaaggcgtcattccggctggccaatat
ggcggtgggaccatgctcgtctgggatcagggctactggatccccgaaggcgatccccgg
gaagactatgcccgtggtcgactgaccttcatcctcgagggcgagcgtctcagaggcagg
tggcacctcgtgcggacgcgtggcaagccgggacaaaagaacgagcaatggctgttgctt
aagtccgacgatgaggctgcccggaccactgacgatccaggcattctggaggagaagaca
acatcactgaagtcaggtcgcacgatcgaggagcttgctggggagggcgagatccgcatc
gaccacgcagcgcgtgagaaggtggcaaaatcacgcgttggtaaagcgcgacggctaacc
aagatcggcggagcgaagaagggcattcttccagcttttgtcgagccggccctggcaaaa
ctggttgagagcgcgccaagcggcaccaactggctgcacgagatcaagctcgatggctac
cgcatgcaggcgcgcatcgatggcggcgaggtgcaactgttgacgcggaagggtctggac
tggaccgcgaagttcaagccagttgcgaatgccctgaaggagctgaagcttccgtcggct
ttgctcgacggcgagatcgttgtcgaggatgaggccggtgtctcaagcttctcggcacta
cagcgggagttgaagggcaaaggcgagcgcttcgtctactatgtcttcgacctgctctat
ctcgacggcgaggatatcaggaaggccaacctttcagaccgcaaggcagcattacggctt
ctgttcgacgacttgcctcagggtggtgttgttcgcttcagcgaccatatcgaggaggat
ggcgcgacgctcgtcaggcatgcctgccgcatgggtctggaggggatcatctccaagcgc
gccgatcggccctacaggtcgggccgcggcgaggattgggtcaagtcgaagtgcactcag
cgccaggaactggtgatcgccggttacttgccctcgaccgcgagcaggaaggcggtaggc
tcactggtgatgggtgtctatgaggctggcaagctcgtcccagtcggtcgcgtcggcacc
ggcttcaccgcggcggtcgccggctctctgtacaaagctctctcctcaatggagatcaag
gcgtcgccctttgccagcaggctccctgccgctgccagtcgtggagtgaagtgggtcagg
ccggagctggtcgcggaggcggaattccgcgggtggacgcatgacggcatggtccgactg
ggctcgttccaaggcctgcgcgaggacaaggccccccggggggtcgtgcgggagacggcc
ggggaagctcctcccgccgcaaaccccggggccacaatccttgagcaagcccatctcacc
caccccgaccggatcctgtgggaagacgagggcatcaccaagctcgggctcgctcagttc
tatacggagattgccgattggatcctgcctcagatcgtgaaccggcctttgtcgctcctg
cgttgcccaggcggctcgcagaaggagtgctttttccagaaacacgcttgggcgggcctc
gatgaggatctgatccagcggatccgcgtgggcgatgacgaggcagtggcgattcgagac
ctcggtggtcttctcgccctcgtgcaagccggcgttctcgagatccatccatggggctcc
acgctgaagaatccggagaagcccgatcgcctcgtctttgacctcgatcctggagagggc
gtcagctgggacgctgtggttcagggtgcgaccgatgtgcgcgactatctcgagggcctc
aatcttgtgagtttcgtcaagacatccggcggcaagggcctgcatgttgtcgttccactc
cgcccgaaggcgtcatgggacgaggccaaggccttcgcggcaggtgtcgcgtcggccatg
accaaggcgagctccgccctctacacgaacacaatggcgaaacgcgcgaggacgggccgg
atcttcatcgactaccttcgcaacgggcggggtgcgacggctgtggcggcctattcgacg
cgagctcgggctggggcttcggtgtcaacgccactcgcctggaaggaactgccgacgatc
cgcagtggcaaccagtatcggatcagcaatctggcggcgcggctatcacatcttcaagac
gacccttggtccgatttcggaaacgtcgaccaagtgattccgaaagggacgagaccgcgg
taa
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