KEGG   Microvirga ossetica: BB934_30980
Entry
BB934_30980       CDS       T05139                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
moc  Microvirga ossetica
Pathway
moc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:moc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BB934_30980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:moc03400]
    BB934_30980
Enzymes [BR:moc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BB934_30980
DNA repair and recombination proteins [BR:moc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BB934_30980
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ANY83265
UniProt: A0A1B2ETF8
LinkDB
Position
unnamed1:738031..740493
AA seq 820 aa
MTIEPKAKRGKSQGDRFVVQKHDARRLHYDLRLELDGVLKSWAVTRGPSLVPGEKRLSVH
TEDHPLKYIDFEGVIPAGQYGGGTMLVWDQGYWIPEGDPREDYARGRLTFILEGERLRGR
WHLVRTRGKPGQKNEQWLLLKSDDEAARTTDDPGILEEKTTSLKSGRTIEELAGEGEIRI
DHAAREKVAKSRVGKARRLTKIGGAKKGILPAFVEPALAKLVESAPSGTNWLHEIKLDGY
RMQARIDGGEVQLLTRKGLDWTAKFKPVANALKELKLPSALLDGEIVVEDEAGVSSFSAL
QRELKGKGERFVYYVFDLLYLDGEDIRKANLSDRKAALRLLFDDLPQGGVVRFSDHIEED
GATLVRHACRMGLEGIISKRADRPYRSGRGEDWVKSKCTQRQELVIAGYLPSTASRKAVG
SLVMGVYEAGKLVPVGRVGTGFTAAVAGSLYKALSSMEIKASPFASRLPAAASRGVKWVR
PELVAEAEFRGWTHDGMVRLGSFQGLREDKAPRGVVRETAGEAPPAANPGATILEQAHLT
HPDRILWEDEGITKLGLAQFYTEIADWILPQIVNRPLSLLRCPGGSQKECFFQKHAWAGL
DEDLIQRIRVGDDEAVAIRDLGGLLALVQAGVLEIHPWGSTLKNPEKPDRLVFDLDPGEG
VSWDAVVQGATDVRDYLEGLNLVSFVKTSGGKGLHVVVPLRPKASWDEAKAFAAGVASAM
TKASSALYTNTMAKRARTGRIFIDYLRNGRGATAVAAYSTRARAGASVSTPLAWKELPTI
RSGNQYRISNLAARLSHLQDDPWSDFGNVDQVIPKGTRPR
NT seq 2463 nt   +upstreamnt  +downstreamnt
atcacgatcgaacccaaggcgaagaggggcaagtctcagggtgaccgcttcgtggttcag
aagcatgatgctcgccgcctgcactatgacctgcggcttgagctcgatggcgttctcaag
agttgggcagtaacaagaggcccgagcctggttccaggtgagaagcgcctttcggtccac
accgaggaccacccgctgaaatacatcgacttcgaaggcgtcattccggctggccaatat
ggcggtgggaccatgctcgtctgggatcagggctactggatccccgaaggcgatccccgg
gaagactatgcccgtggtcgactgaccttcatcctcgagggcgagcgtctcagaggcagg
tggcacctcgtgcggacgcgtggcaagccgggacaaaagaacgagcaatggctgttgctt
aagtccgacgatgaggctgcccggaccactgacgatccaggcattctggaggagaagaca
acatcactgaagtcaggtcgcacgatcgaggagcttgctggggagggcgagatccgcatc
gaccacgcagcgcgtgagaaggtggcaaaatcacgcgttggtaaagcgcgacggctaacc
aagatcggcggagcgaagaagggcattcttccagcttttgtcgagccggccctggcaaaa
ctggttgagagcgcgccaagcggcaccaactggctgcacgagatcaagctcgatggctac
cgcatgcaggcgcgcatcgatggcggcgaggtgcaactgttgacgcggaagggtctggac
tggaccgcgaagttcaagccagttgcgaatgccctgaaggagctgaagcttccgtcggct
ttgctcgacggcgagatcgttgtcgaggatgaggccggtgtctcaagcttctcggcacta
cagcgggagttgaagggcaaaggcgagcgcttcgtctactatgtcttcgacctgctctat
ctcgacggcgaggatatcaggaaggccaacctttcagaccgcaaggcagcattacggctt
ctgttcgacgacttgcctcagggtggtgttgttcgcttcagcgaccatatcgaggaggat
ggcgcgacgctcgtcaggcatgcctgccgcatgggtctggaggggatcatctccaagcgc
gccgatcggccctacaggtcgggccgcggcgaggattgggtcaagtcgaagtgcactcag
cgccaggaactggtgatcgccggttacttgccctcgaccgcgagcaggaaggcggtaggc
tcactggtgatgggtgtctatgaggctggcaagctcgtcccagtcggtcgcgtcggcacc
ggcttcaccgcggcggtcgccggctctctgtacaaagctctctcctcaatggagatcaag
gcgtcgccctttgccagcaggctccctgccgctgccagtcgtggagtgaagtgggtcagg
ccggagctggtcgcggaggcggaattccgcgggtggacgcatgacggcatggtccgactg
ggctcgttccaaggcctgcgcgaggacaaggccccccggggggtcgtgcgggagacggcc
ggggaagctcctcccgccgcaaaccccggggccacaatccttgagcaagcccatctcacc
caccccgaccggatcctgtgggaagacgagggcatcaccaagctcgggctcgctcagttc
tatacggagattgccgattggatcctgcctcagatcgtgaaccggcctttgtcgctcctg
cgttgcccaggcggctcgcagaaggagtgctttttccagaaacacgcttgggcgggcctc
gatgaggatctgatccagcggatccgcgtgggcgatgacgaggcagtggcgattcgagac
ctcggtggtcttctcgccctcgtgcaagccggcgttctcgagatccatccatggggctcc
acgctgaagaatccggagaagcccgatcgcctcgtctttgacctcgatcctggagagggc
gtcagctgggacgctgtggttcagggtgcgaccgatgtgcgcgactatctcgagggcctc
aatcttgtgagtttcgtcaagacatccggcggcaagggcctgcatgttgtcgttccactc
cgcccgaaggcgtcatgggacgaggccaaggccttcgcggcaggtgtcgcgtcggccatg
accaaggcgagctccgccctctacacgaacacaatggcgaaacgcgcgaggacgggccgg
atcttcatcgactaccttcgcaacgggcggggtgcgacggctgtggcggcctattcgacg
cgagctcgggctggggcttcggtgtcaacgccactcgcctggaaggaactgccgacgatc
cgcagtggcaaccagtatcggatcagcaatctggcggcgcggctatcacatcttcaagac
gacccttggtccgatttcggaaacgtcgaccaagtgattccgaaagggacgagaccgcgg
taa

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