Malania oleifera: 131162272
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Entry
131162272 CDS
T09312
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mof
Malania oleifera
Pathway
mof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131162272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mof03041
]
131162272
Enzymes [BR:
mof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131162272
Spliceosome [BR:
mof03041
]
Complex C
Other components
Step II factors
131162272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_16
ABC_tran
TsaE
Sigma54_activ_2
Flavi_DEAD
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
131162272
NCBI-ProteinID:
XP_057974562
LinkDB
All DBs
Position
8:101641596..101648882
Genome browser
AA seq
1178 aa
AA seq
DB search
MAPEAQDAGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITDMGQTCETVDEFDSKLKE
NGAEMPDYFVRTLLTIIHAILPPKSKSEKDVKNEVFSEGRKPKFPGLAIQDSKERIKQLE
REIESETRSHHRDGEEKEEGRRDRGRDRDRDRDRDRDRDRDRDRNRDRDGRHSHRDRDED
DRRSDYRSRGRHRDRNDKHRRDEYEDGDENGDGRRARYQSDEPELYKVYRGRVSRVMDTG
CFVQLKELRGKEGLVHVSQMANRRVGNAKDVVKRDQEVFVKVISVSGQKLSLSMRDVDQD
SGKDLLPLKKSLEDDGFRTNPPTLNQGPTMRTGLSGIRIVEEDDAAPSRRPLKRMSSPEI
WEAKQLIASGVLDVREYPMYDEESDGMLYQEEGAEEELEIELNEDEPEFLQGQSRYSVDM
SPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGER
HLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHD
NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE
EVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGL
LKHLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAS
LITVLQIHLTEPEGDILLFLTGQEEIDHACQSLYERMKGLGKNVPELIILPVYSALPSEM
QSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPIS
QASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGHSTLTMKAMGINDL
LSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPMDPPLSKMLLASVELG
CSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGP
WCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDP
QEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRF
FKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcaccggaggcccaagacgcaggtctgaagaagctagagtatctctctctcgtctca
aaggtgtgttccgagttagaaacacatttagggttcggagacaaggtgttggcggagttc
atcaccgacatgggccaaacgtgcgagactgtcgacgaatttgattccaaattgaaggag
aacggcgcagagatgcctgactacttcgtacggactttgctgaccataattcacgcaatc
cttccgccgaaatcgaagtccgaaaaggacgtgaaaaatgaggtgttctcggagggtaga
aagccgaagtttccagggttagcgattcaagacagtaaagagagaataaagcagctcgag
agagagatcgaatctgagactcgctctcatcatagagacggtgaagaaaaggaagaaggt
agacgagatagaggtagagacagagatagagatagggatagagacagagacagagataga
gatagggatagaaacagagatagagacggacggcacagtcatagagatagggatgaagac
gacagaagaagtgattacaggagtagagggaggcacagggatcgcaatgataagcatagg
agggatgagtacgaggatggggatgagaatggggatggtaggagagctaggtatcagtcg
gatgaacctgaactgtacaaggtttatagagggagggtttcgagggtcatggacacagga
tgctttgtgcagctgaaggaacttagggggaaggagggtctggtgcatgtgtcgcagatg
gcaaatcggagggttgggaatgccaaggatgttgtgaagcgggatcaggaggtctttgtt
aaggtgatttcagtgtcggggcagaaactgagtctttcaatgagggatgttgatcaggat
agtgggaaggatttgcttccattgaagaagagtttggaggatgatggatttaggacaaac
cctccgacattgaaccaggggccaaccatgaggacggggctttcagggatcaggattgtg
gaggaggatgatgctgccccatctcggcgaccactgaagcgaatgagttctccagagata
tgggaagcaaagcagttaattgcttcaggagttttagatgtcagggagtaccccatgtat
gatgaggaaagtgacggcatgctttatcaagaagagggtgcagaggaagagcttgagatc
gagcttaatgaagacgagcctgaattcttgcaaggccaaagtcggtactctgtggatatg
tcgcctgttaaaattttcaagaatccagaggggtctttgagtcgagctgctgcccttcag
tctgctctcataaaggagaggagagaagttcgggaacagcagcagcggacaatgctcgat
tccatcccaaaagatctcaatcgtccttgggaagacccaatgccggagactggtgagagg
catcttgcacaggagcttagaggtgttggtttatcagcatatgacatgcccgaatggaag
aaggatgcttttggaaaagccctaacgtttgggcagaggtcgaagctttcaatccaggaa
cagaggcagagcctgcccatttataaattgaaaaaagaattggtccaagctgttcatgat
aatcaagtacttgtagttattggggagactggttcgggcaagactactcaggtgacacaa
tatctagccgaagcaggttacactacgaggggtaagattggatgcactcagcctcgtagg
gtggctgcaatgtctgtggccaagagggttgcagaagagtttgggtgtcgcttaggagag
gaggttggatatgcaattcgatttgaggattgtactgggcctgacactgtgattaagtat
atgactgatggtatgcttcttagggagattctggtagatgagaacctttcgcaatactct
gtggtcatgcttgatgaagcgcatgagagaactatccacactgatgttctttttggtttg
ctgaagcatcttgtcaaacggagacctgaccttcgtttgatcgtcacgtctgccacattg
gatgctgagaaattctcagggtatttctttaactgcaatatctttaccattcctggaaga
acttttcctgttgagatactttacactaagcagccagaaagtgactatctggatgcatcc
ttgatcactgttctacagatccatttgactgaacctgaaggcgacatcctccttttcttg
actggtcaggaggagattgatcatgcatgccagtctctatatgagaggatgaaagggctc
ggtaaaaatgtgcctgaattgattattttgccagtctatagtgcccttcctagtgaaatg
caatcaaggatttttgagcctgcccctcctggaaagaggaaagtcgttgtggctaccaat
attgctgaggcttctttgactattgatgggatcttttatgtcattgaccctggatttgca
aagcagaatgtatataaccccaaacaaggacttgattcattggttataactcctatttcg
caagcatcagccaagcaacgtgctgggcgagctggccgtactgggccgggaaaatgttac
cgcctttatacagagagtgcttatcgcaatgaaatgtcccccacctcaattccagaaatc
cagaggataaatcttggacattccacacttaccatgaaagctatggggataaatgatctc
ttgtcatttgatttcatggatccgccttcacctcaagctctcatttctgccatggaacag
ctttacagtttaggagctttggatgaggaagggcttctgactaaactgggtaggaaaatg
gctgaatttcccatggatccacctttatctaagatgcttcttgctagcgtggagcttgga
tgcagtgatgagattttgaccatcattgcaatgattcagactgggaacatcttttacagg
ccaagagaaaaacaagcgcaagcagatcaaaagagggccaagttcttccagcccgaggga
gatcatctgactttactagctgtttatgaagcgtggaaggcaaagaatttttctgggcca
tggtgttttgagaactttgtgcagtctcgttccttgaggagagcacaagatgtcagaaaa
cagcttctctccatcatggacaagtataaattggacgttgtgagcgcaggaaagaatttc
acaaagataaggaaggctattacagcaggattcttctttcatgcagctagaaaagatcca
caggagggttatagaaccctagtggagaaccagcctgtttatattcacccaagcagcgcc
cttttccagagacaaccagattgggttatttaccatgagcttgtaatgactacaaaggag
tacatgcgtgaggtcaccgtcattgatcccaaatggcttgtcgaacttgctccaagattc
ttcaaagttgctgatccaacaaaaatgagtaaacggaagcgtcaagaacgcattgaacct
ctttatgacagataccatgaacctaattcttggcgtttgagtaaacgccgtgcttga
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integrated database retrieval system
