Microbacterium oleivorans: BWL13_01654
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Entry
BWL13_01654 CDS
T05832
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
moo
Microbacterium oleivorans
Pathway
moo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
moo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BWL13_01654 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
moo03400
]
BWL13_01654 (ligD_2)
Enzymes [BR:
moo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BWL13_01654 (ligD_2)
DNA repair and recombination proteins [BR:
moo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BWL13_01654 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AZS44071
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All DBs
Position
1657034..1659385
Genome browser
AA seq
783 aa
AA seq
DB search
MPAAPQEVRIDGRRLRLTNLDKVMYPETGTTKGEVIDYLTRIAPAMLPHLDGRPVTRIRW
PDGTGEGSFFAKHLEAGAPSWVARRPIEHSTGAKDYPLVDGIPALVYLAQVASIELHVPQ
WRFDPDGARGNPDRLVLDLDPGPGAGLAECAEVARWARAILTDLGMDPLPVTSGSKGIHL
YAPLDGSRTSEQISAFAKELARALEADHPDLVVSQMSKAARPDKVFLDWSQNNGKKTTIA
PYSLRGRERPAVAAPRTWAELADPDLRHLLFDEVLARVAADGDLLAPLAPTDAGPLRSYI
AKRSAAKTPEPVPDSPAGAASPGASRFVIQEHHARRLHYDLRLERDGVLVSWAVPRGIPE
SASTNHLAVMTEPHPMEYLDFAGDIPAGEYGAGSMSIWDTGTFELEKWRDDEVIFTATGR
GDGPLGSVRLALIRTSGQGEKSQWLLHRMKTDAATPKTPPAPPSAPRPMLATNSTPSLAR
LAADRWGGWVEFKWDGVRALGVWDGARLHLRARSGTDITARYPELTADPGLGSAPCVIDG
EIVALDERNRPSFPLLQHRMHLTKPAEIQREATRIPVQYLLFDVLEVDGTDASSLPLAQR
RELLERIAADTTDTIVLPPVADDVDDALATAEKLGLEGLVVKDPSSPYRRGERSEQWLKV
KLTLMQEVVIGGIRPGKGGRSGAIGSLLMGVPTDNGLHYVGRVGSGFSDATLARLDAALT
PLRTQENPFVDVGRAEASDALWVKPELVGEVEYAEATPNGTLRHARWRGLRPDKTPSEVR
PGG
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgcgccgcaggaggtccgcatcgacgggcgtcgtcttcggctgacgaacctc
gacaaggtcatgtatcccgagacggggacgaccaaaggcgaggtcatcgactatctgacc
cgcatcgccccggcgatgctgccgcatctcgacggtcggccggtcacccgcatccgctgg
cccgacgggaccggcgagggatcgttcttcgccaagcacctcgaggcgggggcgccgtcg
tgggtggcgcggcgtccgatcgagcattccaccggcgcgaaggactaccccctcgtcgac
gggatccccgcgctcgtctaccttgcgcaggtcgcatcgatcgagctccacgtgccgcag
tggcggttcgaccccgacggcgcgcgcggcaacccggacagactcgtcctcgatctcgac
cccgggccgggtgccggtctcgccgaatgcgccgaggtcgcccgatgggctcgcgcgatc
ctgacggacctgggcatggatccgctgccagtcacgagcggcagcaagggcatccacctc
tatgccccgctggatggttcacgcacgagcgagcagatcagcgcgttcgcgaaagagctc
gcccgcgccctcgaagccgaccaccccgatctggtcgtcagccagatgtccaaagcggcc
aggcccgacaaggtcttcctcgactggagtcagaacaacggcaagaagacgacgatcgcg
ccgtactcgctgcgggggcgcgagcgcccggctgtcgccgcgccccggacgtgggccgaa
ctcgccgatcccgatctccgccacctgctcttcgacgaggtgctcgcccgggtggccgcc
gacggcgacctcctcgccccactcgccccgacggatgccggtccgcttcgctcctacatc
gccaagcgatcggcggcgaagacgcctgaaccggtgcccgactcccccgccggtgcggcc
tcccccggcgcctcccggttcgtgatccaggagcaccacgcacggcgccttcactacgac
ctgcgcctcgaacgcgacggggtgctcgtcagctgggcggtgccccgcggcatccccgag
tcggcttcgacaaaccacctcgccgtcatgaccgagccgcatccgatggagtacctcgac
ttcgccggcgacatccctgccggagagtacggcgcgggttcgatgtcgatctgggacacc
gggacgttcgagctcgagaagtggcgtgacgacgaggtgatcttcaccgcaaccggacgc
ggcgacggtccgctcggctcggtgcgactcgcgctcatccgtacgagcggccagggcgag
aagtcgcagtggctgttgcaccggatgaagacggatgccgcgactccgaagacaccgcct
gcgccgccctcggcgcctcgtcccatgctcgcgacgaactcgacgccgtcgctcgcgcgg
ctggcggcggatcgctggggcgggtgggtcgagttcaaatgggacggggttcgcgccctc
ggcgtctgggacggcgcacgtctgcacctgcgtgcccgaagcggcacggacatcaccgcg
cgttaccccgagctgaccgcggatccgggcctcggctccgcgccctgcgtgatcgacggc
gagatcgtcgcgctcgacgagcggaaccgcccgagcttcccgcttctccaacatcgcatg
cacctcacgaagcccgcggagatccagcgcgaagcgacgcgcatcccggtgcaatacctg
ttgttcgacgtgctcgaggtcgatgggacggatgcctcttcacttcccctcgcgcagcgt
cgggagcttctcgaacggatcgccgccgacacgaccgacacgatcgtcctcccccctgtc
gcggacgacgtcgacgatgccctcgcgacagccgagaagctgggtctggagggcctcgtc
gtgaaggatccgtcctcgccctatcgccgcggcgaacgcagtgagcaatggctgaaggtg
aagctcaccctcatgcaggaggtcgtgatcggcggcatccgtcccggcaaaggcggccgg
agcggtgcgatcggctcccttctcatgggcgtcccgacggacaacgggctgcactacgtc
ggccgcgtcggctccggcttcagcgacgcgacgttggcgcgattggatgccgcactcacc
cccctccgcacccaggagaacccgttcgtcgacgtcggccgggccgaggcatccgatgcg
ctctgggtgaagccggagctggtgggagaggtcgaatacgcggaggcaacgccgaacggg
accctccgacatgcgcgctggcgcgggctgaggccggacaagacgccgtcggaagtgcgc
ccgggcggctga
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