Mesorhizobium opportunistum: Mesop_0815
Help
Entry
Mesop_0815 CDS
T01542
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mop
Mesorhizobium opportunistum
Pathway
mop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mesop_0815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mop03400
]
Mesop_0815
Enzymes [BR:
mop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mesop_0815
DNA repair and recombination proteins [BR:
mop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mesop_0815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEH85308
UniProt:
F7Y8Z8
LinkDB
All DBs
Position
865127..867688
Genome browser
AA seq
853 aa
AA seq
DB search
MAGLEQYHSKRDFKKTSEPAGKVARGKKGEVGGGLFVIQKHAATRLHYDFRLEHDGVLWS
WAVTRGPSLDPHEKRLAVHVEDHPIDYAGFEGTIPKGEYGGGSVIVWDEGTWVPETDPAK
AMKKGHINFELKGHKLHGSWHLVRLRPRPGEKRDNWLLIKSDDAAARPGEDILEEAPQSV
KSGLTIEEVGAGKAARGEKPKVWHSNKPAAGKAKAAGRKLDFVEPQLATLEREAPSGEDW
LHEVKFDGYRMQAQIAGTEVRLLTRAGLDWTEKFGGEIVAELARLKCSDAIIDGEVVVLA
DSGVSSFSLLQQDLSAKRTNRFIYYVFDLMRLDGKDLRREPLVERKQALQELLGKPSENA
AVRFSDHFTEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPSWVKSKCTARQEFVIGGY
LPSDKTGRGLRSLLVGYYEGGSLHYAGRVGTGFSTRGANDLKKKLDELKANTSPFDAAVP
KGKGLVWVKPELVGEVEFRSWTSERIIRHASFQGLREDKPAEEVVQEKPRAATPKEPGGK
TSGGKEPGGKSPAKAKSARSGAGKPAGAMTTTVKLSHPDKLLWPDEKISKQGLLDHYAQV
WPRMERFVINRPLSLVRAPDGVGGQRFFQKHASAGMSDKIARMKDPTDGEEILFIRDFDG
IAALVQYGVVEVHIWGSTVDEIEKPDQIIFDLDPDEGVDVKKVREAALDIRGKLDELSLP
NFVKTSGGKGYHVLVPLKPSADWDEVKNFAHDFARALEQAAPDRYTATLSKKARTGKIFV
DYLRNGRGATTVAPYSSRAKKGATVSMPVTWAEIEAGLAPNAFPIGDKTTAKQLKEADPW
KEFFKVAKVLKRG
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggccggactcgaacagtatcattccaagcgcgacttcaagaagacgtccgaaccggcc
ggcaaggtcgcgcgcggcaagaagggcgaggttggtggcggtctcttcgtcatccagaag
catgccgcgaccagactgcactacgacttccgcctcgagcatgacggggtgctgtggagc
tgggcggtgacgcgcggcccgagcctcgacccgcacgaaaagcggctcgccgtccatgtc
gaggaccacccgatcgactatgccgggttcgaaggcaccattcccaagggcgaatatggc
ggcggctccgtcatcgtctgggacgaggggacatgggttcccgagaccgacccggccaag
gcgatgaagaagggccatatcaacttcgagctcaagggccacaagctgcatggctcatgg
catctggtgcggctgaggccgcgcccgggggagaagcgcgacaactggctgctgatcaag
tcggacgatgcggcggcgcgtccgggcgaggatatcctcgaggaggcgccgcaatcggtg
aagtcgggcctgacgatcgaggaggtcggcgcgggcaaggccgccaggggcgagaaaccg
aaagtctggcattccaacaagccggccgccggcaaggcgaaggccgcgggccggaaactc
gactttgtcgaaccgcagcttgccacgctggaacgggaggctccgtcgggcgaggactgg
ctgcacgaggtgaagttcgacggctatcgcatgcaggcacagatcgccggcacggaggtg
cggctcttgacccgcgccggcctcgactggacggagaaattcggcggcgagatcgttgcc
gaactcgctcgcctgaagtgcagcgacgccatcatcgacggcgaggtcgtcgtgctggcc
gacagcggtgtctcgtccttctcattgctgcagcaggatctgtcggcaaagcggacaaac
cgcttcatctactatgtcttcgacctgatgcgcctcgacggcaaggacctgcgccgcgag
ccgctggtcgagcgcaagcaagccctgcaggaactgctcggcaagccatccgagaacgcg
gcggtgcgtttctccgaccatttcaccgagcccggcaagatcatgctggagcatgcctgc
cgcatgggactggagggcgtcgtctccaaacgcgccgacgcgccctatcgcagcgggcgc
ggccctagctgggtgaagtcgaaatgcacggcgcggcaggaattcgtcatcggcggctat
ttgccgtcggacaagaccgggcgcgggctgcgctcgctgctggtcggttattacgagggc
ggcagcctacactatgccggccgcgtcggcaccggcttctccaccaggggtgccaacgat
ctgaagaagaaactcgatgagctgaaggcgaatacctcgccgttcgacgcagccgttccc
aagggcaaggggctggtctgggtcaaacccgagcttgtcggcgaagtggagttccgcagc
tggacatcggagcgtataatacgccatgcctcgttccaggggctgcgcgaggacaagccg
gcggaggaagtcgtgcaggaaaagcccagggcggcgacacccaaggaaccagggggcaag
acatcagggggcaaggaaccaggaggcaagagcccagccaaggcgaaatccgcgcgaagc
ggcgctggcaaacctgccggggcgatgacaaccacggtaaaactctcccatcccgacaag
ctgctgtggcccgacgaaaaaatctccaagcagggcctgcttgatcactacgcgcaggtt
tggccgcgcatggagcgcttcgtgatcaaccggccgctaagcctggtgcgggcgcccgat
ggcgtcggcggccagcgctttttccagaagcacgcctcggccgggatgagcgacaagata
gcccggatgaaggacccgacggacggcgaggagatcctgttcatccgggatttcgacggc
atcgccgcgctggtccagtacggcgttgtcgaagttcatatctggggctctaccgtcgac
gagatcgaaaagcccgaccagatcatcttcgatctcgatcccgacgaaggtgtcgacgtg
aagaaggtgcgcgaggcggctctagacatcaggggcaagctcgacgagctgtcgctgccg
aacttcgtcaagacatcgggcggcaagggctatcatgtgctggtgccgctgaagccctcg
gcggactgggacgaggtcaagaatttcgcccatgatttcgccagggcgctcgagcaggcc
gcccccgaccgttatacggcgacactgtcgaaaaaggcgcgcaccgggaaaatcttcgtc
gactatctgcgcaatggcaggggcgccacaacagtcgcgccctattcctcgcgcgccaag
aagggcgccaccgtgtcgatgccggtgacctgggccgaaatcgaggccggactggcgccc
aacgccttcccgatcggcgacaagacgacggcgaagcagttgaaggaagccgacccgtgg
aaggaatttttcaaggtggcgaaggtgttgaagcggggatag
DBGET
integrated database retrieval system
