Microtus oregoni (creeping vole): 121449379
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Entry
121449379 CDS
T08307
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03030
DNA replication
morg03410
Base excision repair
morg03420
Nucleotide excision repair
morg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121449379 (Lig1)
03410 Base excision repair
121449379 (Lig1)
03420 Nucleotide excision repair
121449379 (Lig1)
03430 Mismatch repair
121449379 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
morg03032
]
121449379 (Lig1)
03400 DNA repair and recombination proteins [BR:
morg03400
]
121449379 (Lig1)
Enzymes [BR:
morg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121449379 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
121449379 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121449379 (Lig1)
DNA replication proteins [BR:
morg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121449379 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121449379 (Lig1)
DNA repair and recombination proteins [BR:
morg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121449379 (Lig1)
NER (nucleotide excision repair)
Other NER factors
121449379 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
121449379 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
121449379
NCBI-ProteinID:
XP_041509676
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MSVKSQVKVLGLQVQLMRKKQQERKGENSTATMQRSIMSFFQPTKEGKAKKPEKETANSI
GEKESPPKVALKERNRLVSESDSPVKRPGRKGAQDLSSEGEEEDEAPGTPKVQKSVSDSK
QNSPSSPDTCPENSPFFNSPSMDISPSGFPKRRTARKQLPKRTIQDSVEEQNEDKDRAAK
KRKKEEEALTPTESLTEAEDIKQKEEKEGSQSIVPPEPAKSPESVTLPKTENIPVCKAGV
KQDPQEEEQSKPPARSAKTLSSFFAPRKPAVKPEVKQEKSGTPRKEETKGTLDPTNYNPS
KSNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLP
VLYLSLSRLGPPQQGLELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRST
QRLMLPPPPLTTSGVFTKFCDIARLTGSASMAKKVDIIKGLFVACRHSEARFIARSLSGR
LRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGKTAEARKMWLEEQGMILKQTFCE
VPDLDRIIPVLLEHGLERLPEHCRLSPGIPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKY
DGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREK
KQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIFLNGESLTRQPLSRRRQLLRENFVET
EGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDY
LDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHH
QSLKALVLPTPRPYVRIDGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVDKEKGIS
LRFPRFIRVRGDKQPEQATTSDQVACLYRKQSQIQNQQSSDSDSDFEDCY
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcaagagccaggtaaaagtactgggtttacaggtacaactaatgagaaagaaa
caacaagagaggaaaggggagaactccactgccaccatgcagagaagtattatgtcattt
ttccaacccaccaaagagggtaaagcaaagaagcctgaaaaggagacagccaacagcatc
ggagagaaggagtcccctccaaaggtagcattgaaagagaggaatcgactggtgtctgag
agtgattctccagtgaagaggccaggaaggaagggagcccaggacctgagcagtgaaggg
gaggaggaagatgaagctcctggcacccccaaagttcagaagtctgtgtcagactccaaa
cagaactctccttccagccctgacacatgtcctgagaatagtcctttcttcaacagcccc
tccatggatatctccccatcaggattcccgaagcgtcgcactgctcggaagcagctcccg
aaacggacaattcaggactctgtggaggagcagaatgaggacaaagacagagcagccaag
aaaaggaagaaggaagaagaagcactgaccccaacagaaagtctcacagaggctgaagat
ataaaacagaaggaagaaaaggaggggagccagtccatagtgccccctgagcctgcaaag
tcccctgagtcagtaaccctgccaaagacagagaacattccagtgtgtaaggctggcgtc
aaacaggatcctcaggaagaggagcagagcaaacctcctgccagaagtgccaagacactc
agcagcttctttgctccccggaagccagcagtgaaacctgaagtgaaacaagaaaagtca
ggtactccaaggaaggaagagaccaagggaaccctggatccaacaaactacaatccttcc
aagagtaactaccatcccattgaagatgcctgctggaaacacggccagaaggttcctttt
cttgctgtggcccggacatttgagaagatagaggaggtttctgctcgcctcaagatggtg
gagacactgagcaacctgctacgctctgtggtggccctgtcacccccagacctgctccct
gtcctttacctcagcctcagccgccttgggccacctcagcagggactagagctgggcgta
ggtgatggtgtcctcctcaaggcagttgcccaggccacaggtcgtcagctggagtccatc
cgggctgaggtagctgagaagggtgatgtgggactggtggccgaaaacagccgcagcact
cagagactcatgctgcccccacctccactcaccacctccggggtctttaccaaattctgt
gacattgcccggctcactggcagtgcttccatggctaagaaggtggacatcatcaagggc
ctttttgtcgcctgccgccactcagaagcccgattcattgccaggtccttaagtggacgg
ctgcgccttgggctggctgagcagtcggtcttggctgcgcttgcccaggctgtgagcctc
acaccccctggccaagaatttccccctgctgttgtggatgctgggaagggcaagacagca
gaggccagaaagatgtggttggaagaacaaggcatgatcttgaagcagaccttctgtgag
gtgcctgacctggatcgaatcatccctgtgctgttggaacatgggctggaacgtctccca
gagcactgcaggctgagcccagggatccctcttaaaccaatgctggcccatcccactcgg
ggtgtcagcgaggtactgaagcgctttgaggaggtggacttcacctgcgagtataaatac
gatgggcagcgggcacagattcatgttctggaaggtggagaggtgaagatcttcagcagg
aaccaggaagacaacacaggaaagtaccctgacatcatcagccgcatccccaagattaaa
ctcccctctgtcacttctttcatcctggacaccgaggctgtggcctgggatcgggaaaag
aagcagatccagccattccaagtgctcaccactcgaaagcgcaaggaggtggatgcatca
gagatacaggtgcaggtgtgtctgtatgcctttgatctcatcttcctcaacggagagtcc
ctgactcgccagcccttgtctcgacgccggcaactgctccgggagaactttgtggagacg
gagggcgaatttgtctttgccacctccctggacaccaaagatatcgagcagatcgctgag
ttcttggagcagtcggtgaaggactcctgtgagggactgatggtgaagaccctggatgtt
gatgccacctatgagatcgccaagaggtcacacaactggctcaagctgaagaaggactac
cttgacggtgtgggtgacactctggatcttgtggtgattggtgcctatctgggtcggggg
aagcgtgctggccggtatgggggcttcctgttggctgcctatgatgaagagagtgaagag
ctgcaggccatatgcaagttgggaactggattcagtgatgaagagctggaggagcatcac
cagagcctgaaggccctggtattgccaaccccacgcccctatgtgagaattgatggggca
gtggctccagaccactggctggaccccagtgtcgtgtgggaggtgaagtgtgcagatctc
tccctgtcccccatctaccctgctgcacggggcctggtggacaaagaaaaaggtatctcc
cttcgtttccctcggttcattcgtgtccgtggagacaagcagccagagcaagccactacc
agtgaccaggtggcctgtttataccggaagcagagtcagattcagaaccagcaaagctca
gactcggactccgactttgaggactgctattaa
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integrated database retrieval system
