Mycobacterium ostraviense: LTS72_02325
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Entry
LTS72_02325 CDS
T07946
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mot
Mycobacterium ostraviense
Pathway
mot03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LTS72_02325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mot03400
]
LTS72_02325
Enzymes [BR:
mot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LTS72_02325
DNA repair and recombination proteins [BR:
mot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LTS72_02325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UGT92294
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All DBs
Position
459206..461497
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AA seq
763 aa
AA seq
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MGSATEQRVTLTNADKVLYPATGTTKRDVFDYYTRIAEVMVPHIAGRPATRKRWPNGVDQ
PSFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE
WTRRGAQELKPGPATRLVFDLDPGEGVTMAQLAEVAHAVRDLITDIGLTTFPLTSGSKGL
HLYAPLDQPVSSRGATVLAKRVAQQLEKTMPMLVTATMTKSLRAGKVFLDWSQNNGSKTT
IAPYSLRGRDQPTVAAPRTWDELDDPGLRQLRYDEVLPRVARDGDLLAPLDADLPGVDRL
TKYRSMRDASKTPEPVPRSKPGVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PDTTSVNHLAVRTEDHPLEYATFQGTIPKGEYGAGTVIIWDSGTYDVEKFRDSAENGSEK
GEVIVNLHGNRISGRYALIQTTGDQWLAHRMKDQQVFDFDSLAPMLTTHGSVARLKGGQW
AFEGKWDGYRLLVEADHGSVRLRSRSGRDVTGEFPQLRSLAADLADHHVVLDGEVVALDS
AGVPSFNEMQNRVRATRIEFWAFDLLYLDGRALLRAKYQDRRKLLETLGAASELIVPELL
PGDGAEAMEYSRKRGCEGVIAKRRDSGYQPGRRSAAWIKDKHWNTQDVVIGGWRAGEGGR
SSGIGSLLMGIPGPSGLHFAGRVGTGFTQRDLDNLKRTLAPLHTDENPFGPSLPAREAKG
VTFVKPTLVGEVRYSEWTPDDRLRQTSWRGLRPDKDPSEVVRE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggcgacggagcagcgggtgacgctgaccaacgcggacaaggtgctctatccg
gcgaccggcaccaccaagcgcgacgtcttcgactactacacccgcatcgccgaggtgatg
gtgccgcatatcgccgggcgtccggcgacccgcaaacgctggcccaacggcgtcgaccag
ccgtcgttcttcgaaaagcagctggcatcctcggcgccggactggctgccgcgggcaagc
gtcgtgcaccggtccggaaccacgacctatccgatcatcgacagcgcgacggggctggcc
tggatagcccagcaggcggcgctcgaggtgcacgtgccgcagtggcggttcgtcgccgaa
tggacacgacgcggcgcgcaggagttaaaacccggcccggctacccgattggtgttcgac
ttggacccgggcgagggcgtgacgatggcccagctggccgaggtcgcacatgcggtccgg
gacctgatcaccgatatcgggctgaccaccttcccgctgaccagcggcagcaagggcctg
catctctacgcaccgctggatcagccggtgagcagcagaggcgccacggtgctggccaaa
cgcgttgcgcaacagctggagaagacgatgcccatgttggtcaccgcgaccatgaccaag
agcctgcgggcgggcaaggtgtttctggactggagccagaacaacgggtccaagaccacc
atcgcgccgtactcgctgcgcggccgcgaccagccgacggtcgcggcaccccgcacctgg
gacgaactcgacgatcccgggctgcgccagctgcgctatgacgaggtactgccccgggtg
gcccgcgacggtgatctgctcgccccgttggatgccgacctgcccggcgtggaccggctg
accaagtaccgcagcatgcgcgacgcgtcgaagaccccggagccggttcctcggtctaaa
cctggtgtcggccaaggtaatacctttgtcatccaggagcaccacgcccgccggctgcac
tacgacttccggctggaacgcgacggtgtgctggtgtcgtgggcggtgccgaagaacctg
ccggataccacctcggtgaatcatctcgcggtgcgcaccgaagatcatccgctggaatat
gcgacatttcagggcaccatcccgaagggggagtacggcgccggcacggtgatcatctgg
gactccggcacttacgacgtcgagaagttccgcgactccgccgaaaacgggtccgaaaaa
ggggaagtgatcgtcaacctgcacggcaatcggatctccgggcgatacgcgctgattcaa
accaccggtgaccagtggctggcgcaccgcatgaaagaccagcaggtgttcgacttcgac
agcctcgctccgatgctgaccacccatggttcggtggcgcgtctgaaggggggtcagtgg
gccttcgagggcaagtgggacggctaccggttgctggtggaagccgaccacggttccgtt
cggctgcgctcccgcagtggccgcgacgtcaccggggaattcccgcaattgcgctcgctg
gcagccgatctcgctgatcaccacgtggtgctcgacggggaggtagtcgcgctcgactcc
gccggcgtgcccagcttcaacgaaatgcagaaccgggtccgagccacccgcatcgagttc
tgggcgttcgacctgctctacctcgacggccgcgcactgctgcgagccaaataccaggac
cgccgcaagctgctggaaacgctgggtgccgcaagtgaactcatcgttcccgagctgctg
cccggcgatggagccgaggccatggagtactcccgtaagcgcggttgtgagggggtgatc
gccaagcggcgtgattccggttatcagccgggccggcgttcggcggcatggatcaaggac
aagcactggaacacccaggacgtcgtcatcggcggctggcgggccggggagggcggccgc
agcagcggcatcggctcgctgctgatgggcattcccggtccttccgggctgcatttcgcc
gggcgagtcggaacgggtttcacccaacgcgacctggacaacctgaaaaggacgctggcg
ccgttgcacaccgacgaaaatcctttcggcccttcgcttccggcgcgtgaggccaagggt
gtcacgttcgtcaagccgacgctggtcggcgaggtgcgctacagcgaatggacccccgac
gatcggctgcggcaaacgagttggcgcggactgcgtccggacaaggacccaagtgaggtg
gtgcgggaatga
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