Candidatus Methylomirabilis oxygeniifera: DAMO_2534
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Entry
DAMO_2534 CDS
T02155
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mox
Candidatus Methylomirabilis oxygeniifera
Pathway
mox03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DAMO_2534 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mox03400
]
DAMO_2534 (mfd)
Enzymes [BR:
mox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DAMO_2534 (mfd)
DNA repair and recombination proteins [BR:
mox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DAMO_2534 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CBE69607
UniProt:
D5MJM2
LinkDB
All DBs
Position
complement(2176612..2180070)
Genome browser
AA seq
1152 aa
AA seq
DB search
MELAEDLRIPEIGEIVDRLDSGADALYLTGLFGASKALILSQIARRSGRPLVVVTSSSAE
AELLAKDLQVFFRDSVGVMAERDEDPETGYQRITCLTGLATKNCDLAVVCLQAALERLAP
PSAILGAAFTLYVGRLIARDELVGVLETGGYRRVHQTTDRGEYSLRGNLLDLFPLTPSLN
GSTGLTTGRVEPPDCPVRAEFFGDEILELRAFDPATQRSIGSVEQVTVLPVVEAPLTGEV
CRRALEVLRAMKKTRDSSVPSEIITALEDRRQVLGLDTYLPYFYPEPADLLQYVAPDALW
VLIDPTGLRAAARDVAPSTSLVDWSDVEQRLSLRPRIYMEEFLPTNSLAEEATLGFQVRT
IPAYRGRMTELIRDLQEWRRQGRKIHLVCRSEAQGGRLAEVLREHDVAASVGLGVASPGE
IAVLSHELSSGFHLDEALLTYITEAEIFGARHIPPRRLRPKEISPLASYQELTYGDFVVH
EDHGIGVYKGLRQLTVGGTEGDYLLILYAEHAKLYVPTGKLHLIHRYAGADSNPPTLDRL
GSASWAKAKERVKASVREMAQELLALYASRQVIKGHALPPDTPWQREFEAGFPYEETPDQ
LQAIADVKADMERDRPMDRLICGDVGYGKTEVAMRAAFKTIIGGKQVAVLVPTTVLALQH
FQTFSERFGGFPAKVEMLSRFRSRKEQSEVLRGVGEGVVDIVIGTHRLLQKDVRFRDLGL
LVVDEEHRFGVAAKERMKQLRRQVDVLTLTATPIPRTLHMSMLGVRDISTIETAPDNRLS
IKTTVARFDPALIKEAIEHELDRGGQVFFVHNRVESIQGVARLIKQLVPEARLAVAHGEL
PEERLERIMCDFYDGTFNVLLCTTIIESGLDVSAANTIIIDRADALGLAQLYQLRGRVGR
DKHRAYAYLLVPKDAALSETAKKRLQVIAELTELGSGFKVAARDLEIRGTGNLLGPEQHG
QIAAVGIDLYCRLIESTVKELKGQAVAEPVEPVIRLEAEGYLPEIYIEDSNVRLQLYKRL
AAFSGLSEVSALREELVDRFGEPPPETERLLTAMALRILARTLHIREAVVVGKTIRIVFD
ESPPLAPDKVATLLREEGGRLRYIPKSSHPSSTKGGPVGGYRTGYDELEYKVEGGDKIAI
AQTLLSRLQACR
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggagttggcggaagatctccgaatcccggagatcggcgagatcgtggaccgacttgac
agcggagcggacgcgctatatctcaccggccttttcggagcctcgaaagcgttgatcctt
tcccagatcgctcgccggtcgggtcgccctctcgtggtcgtaacctcctcgtctgctgag
gccgagctgctggcgaaggatctgcaagtcttcttccgcgactcggtaggtgtcatggcc
gaacgcgatgaggatccagagaccgggtatcagcggattacctgtctgacgggtctggcg
accaagaactgtgaccttgcagttgtctgtcttcaagcggccctcgaacgccttgcgcct
ccctcggctatcctgggagccgcctttacgctgtacgtcggacgactgatcgcgcgggat
gaactggttggcgttctcgagacaggtggttaccgtcgagtgcatcagacgacagaccgc
ggcgaatacagcctgcgcgggaacctcctcgacctgttccccctcacacccagcctgaac
ggttcgaccgggctcaccacaggccgtgtcgaaccgccggattgtcctgttcgcgctgag
ttcttcggtgacgagatacttgaactccgtgcattcgatccggctacccagcggtccatc
ggctccgttgagcaggtgaccgtcctgccggttgtagaggcgccattgaccggtgaggta
tgtcggcgggccctcgaggtgctccgcgcgatgaagaagacccgggacagctcggttccg
tccgagatcatcacggcgcttgaggatcggcgacaggtcctgggcctcgatacgtatctt
ccatacttctatccggaaccggccgatctcctgcagtacgtagctccggatgccttgtgg
gtcttgatagatccgaccggcctccgggctgcggcgcgcgacgtcgcgccgtccacctca
ctggtcgactggagcgacgttgaacagaggctctctctgcggccgcggatctacatggag
gagttcttaccgacgaacagccttgcggaagaggcgactctcgggtttcaggtacgcacc
attccggcctaccgtggacgaatgaccgaattgatacgcgacctccaagagtggcgtcgg
cagggtcggaaaatccacctggtctgcaggagtgaggcccagggtgggcgcctggctgag
gtactgagggagcacgatgtcgcggcgtctgtcgggctcggcgtggcgtcgccgggtgag
attgccgttctttctcacgagctcagcagcggctttcatctggatgaggcattgctgacc
tatatcaccgaagccgagatctttggggctcggcacatcccacctcgacgcttgcgacca
aaggagatctcccctcttgcctcgtaccaggagttgacctatggcgattttgtggttcac
gaggatcacgggatcggtgtgtacaaagggctgcggcagcttactgtgggcgggacggag
ggtgactacctgctcatcctctatgccgagcacgccaagctgtatgtgcctaccggtaaa
ctccacctgatccatcggtatgcgggtgctgacagcaatccaccgaccctcgaccggttg
gggagcgcctcgtgggccaaggccaaggagcgggtcaaggcgtccgttcgcgagatggcc
caggagttgctcgcgctgtatgcgtccagacaggtcatcaaagggcatgccctccccccc
gatacgccgtggcaacgggaattcgaggctggatttccatatgaggaaaccccggaccaa
ctccaggcgatcgccgacgtcaaggccgacatggagcgagaccggccgatggaccgtctg
atctgcggcgacgtcggatacggtaagaccgaggtggcgatgcgggccgcctttaagacg
atcatagggggaaagcaggtcgcggtgctggtgccgactacggtccttgccctgcagcat
tttcagacgttttccgagcggttcggcggctttccggctaaggttgagatgctctcacgc
ttccgcagccgcaaggagcagagcgaggtgctgcgtggcgtcggtgagggggttgtcgat
atcgtgatcggcacccaccgcctgctccagaaggatgtccggtttcgagacctggggctg
ttagtggtggatgaggagcaccgctttggcgtcgcggctaaggagcgcatgaagcaactg
cggcgacaggtcgatgtcctgacgcttaccgccacaccgattccgcggacccttcatatg
tcgatgttgggagtccgggacatcagcaccatcgagaccgcgccggataaccgtctctcg
atcaaaacgaccgtcgccaggttcgacccggcgctcatcaaagaggcgatagagcacgag
ctggacagaggggggcaggtcttcttcgtccataatcgcgtggagagcatccagggcgtg
gcgcgtctgatcaagcagttggttcctgaggcgagactggcggtggcgcacggcgaatta
ccggaagaacgcctggaacggatcatgtgcgacttctacgacggcacattcaatgtcctg
ttgtgtaccacgattatcgaatccggcctggatgtcagcgccgccaacacgatcattatc
gatcgagccgatgccttgggcctcgcgcagctctatcagcttcgcggacgggtcggtcgg
gacaagcatcgagcctacgcctacctcctggtaccgaaggatgctgcgctgtctgagacg
gcaaagaagcgactccaggtcattgcagaactgaccgagcttggctccggattcaaggtg
gcggcgagagatctggagatcaggggcacgggtaacctcctgggaccggagcagcacggc
cagatcgccgccgtagggattgatctgtactgccgattgatcgagtcaacggtcaaagag
ttgaagggtcaggcggtggcggaacccgtcgagcctgtcatcaggctggaggcggaaggg
tatctgccggagatctatatagaggattccaacgtacggctccagctctacaagcgattg
gccgcgttctctgggttgtcggaggtctccgcccttcgagaggagctggtcgatcgcttt
ggtgagcctcctccagagacggaacggctgctgaccgcgatggcgcttagaatcctggcc
cggacgctccacattcgcgaggctgttgtcgtgggcaagacgatccgtatcgtgttcgat
gagtcgccgccgcttgctccggacaaggtcgcgactctgcttcgtgaagagggcggccga
ttacgctatattccgaaatcctcccatccctcctctacaaaaggggggcccgtgggaggt
taccgtacagggtacgatgaactggaatacaaggtagagggaggcgacaagatcgctatt
gctcagacgctattgtcgcgtcttcaggcgtgtcgatga
DBGET
integrated database retrieval system
