Mycolicibacterium pallens: K0O64_23905
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Entry
K0O64_23905 CDS
T07675
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpae
Mycolicibacterium pallens
Pathway
mpae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K0O64_23905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpae03400
]
K0O64_23905
Enzymes [BR:
mpae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K0O64_23905
DNA repair and recombination proteins [BR:
mpae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K0O64_23905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QYL16058
LinkDB
All DBs
Position
complement(4922142..4924442)
Genome browser
AA seq
766 aa
AA seq
DB search
MVNDVWPPGATRGPRVTLTNADKVLYPATGTTKADVFSYYTTIADVMLPHIAGRAVTRKR
WPNGVDEPSFFEKQLASSAPGWLERATVDHRSGSTTYPIIETPIGLAWIAQQASLEVHVP
QWRFTPDGKPGPATRLVFDLDPGEGVTMPQLCEVANAVRELMEDIGLTVYPLTSGSKGLH
LYAPLADPVSSSGAVTVARRVAQQLEKSMPKLVTATMTKSLRDGKVFLDWSQNNGSKTTI
APYSLRGRATPTVAAPRTWEEIGDPELRHLEYHEVLARVAEQGDLLAGLDDDVPRYDRLT
TYRSMRDAAKTPEPVPAARPAIGENNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLP
DTPAVNHLAVHTEDHPLEYATFEGDIPKGEYGGGKVIIWDSGTYEAEKFRDRAPDGPAKG
GEVIVDLHGQRISGRYALIQTNGDQWLAHRMKEQPAPRLQDYSPMLATLGSVEKLTAAQY
GFEGKFDGYRLLVEISGGQLRAQSRSGRDLTADYPQLASLAADLADHDVILDGEVVALDA
DGVPNFGEMQNRVRATRIEFWAFDILRLDGRSLLKAKYRDRRKVLETFAQGTNLIVPPLL
DGDGPEALEFSRKKKWEGVVAKKWDSTYQPGRRSAAWIKDKNWNTQEAVIGGWREGNGGR
SSGIGALLLGIPEDGGLRFIGRVGTGFSDKELGRLKKILQPLHTDESPFATPLPRVDAKG
VTYVRPELVGEVRYGEWTSDGRLRHPSWRGLRPDKAPADVELESPS
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgacgtgtggccgccgggggcgacgagaggaccgcgggtcacgctgaccaac
gccgacaaggtgctgtatccggccaccggcaccaccaaggccgacgtgttctcctactac
acgacgatcgctgacgtgatgctgccgcacatcgccggccgggcggtcaccaggaagcgt
tggccgaacggtgtcgacgagccgtcgttcttcgaaaagcagctggccagttcggcgccc
ggttggctggagcgcgcgacggtcgaccaccgctcgggcagcaccacgtatccgatcatc
gaaacccccattgggctggcctggatcgcgcagcaggcgtcgctggaagtccatgtgccg
caatggcggttcactccggacggaaagcccgggcctgcaacacgtttggtcttcgacctg
gacccgggtgagggcgtgacgatgccgcaactgtgcgaggttgccaatgcggtccgggag
ctgatggaggacatcgggctgacggtgtatccactgaccagtggcagcaaggggttgcat
ctgtatgcgccgctggccgatccggtgagtagcagcggtgccgtgacggtggcgcgccgg
gtcgcccagcagctggagaagagcatgcccaagctcgtcaccgcgacgatgaccaagagc
ctgagggacggcaaggtgtttctggattggagtcagaacaacgggtccaagacgacgatc
gcgccgtattcgttgcgcggccgggcgactccgacggtggccgcgccccggacgtgggag
gagatcggcgatccggagttacggcatctggagtatcacgaggtgctggcgcgggtcgcc
gagcagggtgatctgctggccggactggacgacgatgtgccgcggtatgaccggctgacc
acgtaccgcagcatgcgggatgcggccaagacaccggagccggtgcccgccgccaggccg
gcgatcggggagaacaacacgttcgtgatccaggaacaccatgcgcgacgcctgcactac
gacttccggctggagcgtgacggcgtgctggtgtcgtgggcggtgccgaagaatctgcca
gacaccccggcggtgaaccatctggccgtgcacaccgaggaccatcccctcgagtacgcg
actttcgaaggggacatcccgaagggggagtacggcggcgggaaggtcatcatctgggac
tccggcacgtatgaggcggagaagttccgggaccgtgcccccgacggtccggccaagggc
ggcgaggtgatcgtcgacctgcacggccagcgaatctcgggccgctatgcgctgatccag
accaacggtgatcagtggctggcgcaccggatgaaggagcagccggccccgcgcctgcag
gactattcgccgatgctggccacgctggggtcggtcgagaaactgactgcggcgcaatac
gggttcgagggcaagttcgacggttatcggctactggtcgagatctcgggcgggcagctg
cgcgcacaatcacgcagcgggcgcgacctgaccgccgactatccgcaattggcttcgctg
gcagccgatctcgccgaccacgacgtcatcctcgacggtgaggtcgttgcactggatgcc
gacggggtgccgaacttcggcgagatgcagaaccgggtgcgcgccacccgcatcgagttc
tgggcgttcgacatcctgcggctcgatgggcgttcactgctgaaggccaagtatcgcgac
cggaggaaggtgctcgaaacgttcgcgcagggaacaaatctgatcgtgccgccgctgctc
gacggtgacggtccggaggcactggagttctcccgcaagaagaagtgggagggtgtcgtc
gccaaaaagtgggactccacgtatcagcccggccggcgatcggcggcgtggatcaaggac
aagaactggaacacccaggaagccgtgatcggcgggtggcgagagggtaatggcggacgc
tcaagtgggatcggtgcgctgctgctcggcattccggaagacggcggccttcggttcatt
ggccgggtgggcacggggttctcggacaaggagctgggccggttgaagaaaatccttcag
ccgcttcacaccgatgaatcaccttttgccacaccgcttcccagagtggacgccaagggc
gtcacctacgtgcggccggagctggtcggcgaggtgcgctacggcgagtggacgtccgac
ggccgactgcggcatccgagctggcgtggcctgcggcccgataaggcgcccgccgacgtg
gagctggagtcgccgagttag
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