Mycobacterium paragordonae: C0J29_24575
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Entry
C0J29_24575 CDS
T06847
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpag
Mycobacterium paragordonae
Pathway
mpag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C0J29_24575 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpag03400
]
C0J29_24575 (mfd)
Enzymes [BR:
mpag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0J29_24575 (mfd)
DNA repair and recombination proteins [BR:
mpag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C0J29_24575 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AYE99121
UniProt:
A0A386UGH1
LinkDB
All DBs
Position
complement(5510866..5514513)
Genome browser
AA seq
1215 aa
AA seq
DB search
MTAPGTASPDTPIAGLVELALTAPTFQQLIERASDRPEQLPLVGPASARLYVAAALARQG
PLLVVTATGREADDVSAELRGVLGDAVAVFPSWETLPHERLSPGIDTVGTRMMVLRRLAH
PDDARLGPPLRVVVTAVRSLLQPMAPQLGRQEPLTLTVGDETPFEDVVQRLVDLAYTRVD
MVGRRGEFAVRGGILDVFAPTAEHPVRIEFWGDEITEMRMFSVADQRSIPEIDVDVLVAV
ASRELLLTEDVRARAAELAGQHPASENTVTGSIIDMLAKLAEGIPVDGMEALQSVLQPAQ
DGAPALLTDQLAEGTPVLICDPEKVRTRAADLIKTGREFLEASWSVAALGTDAPVDVEQL
GGSGFAELDEAREAARRAGHPWWTLSQLSDESAVELDIRSAPSARGHQHDIESIFAMLRA
HVSTGGYAAMVAPGTGTAHRMVERLAESDIAAAMLEPGQTPKPGVVGVVKGPLHDGVVIP
GANLVIITEADLTGSRATATEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER
TVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWTNTKT
KARRAVREIAGELVALYAKRQASPGHAFAQDTPWQAEMEDAFGFTETMDQLTAITEVKSD
MEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG
FPVTVKGLSRFTDPAESRKVIEGMADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFG
VEHKEHIKALRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD
KQIAAALRRELLRDGQAFYVHNRVSSIDSAAARVRGLVPEARVVVAHGQMPEDLLERTVQ
GFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFL
YPPNAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLY
VRLVGEAVEAYRAAADGQTVTTPEETKDVRIDLPVDAHLPPDYISSDRLRLEGYRRLASA
TSDSDIAAVIEELIDRYGPLPEPAERLVAVARLRLLCKAAGITEVSAVSATTVRLSPLTL
PDSAQVRLARMYPGGRYRATTSTVQVPIPRAGGIGAGHIRDVELVQMVADLVTALAGKPQ
QDVGMSNTPGKERQA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggactgcaagcccagataccccgatcgcggggctcgtcgaattggcg
ctcactgcgccgacatttcaacagctcatcgagcgcgcctccgatcgacccgaacaattg
ccgctggtcggaccggccagcgcgcgcctctacgtggccgctgcgctggcccggcagggg
ccgcttctggtggtcaccgccaccggtcgcgaagccgacgacgtgagcgccgaactgcgc
ggcgtgctcggcgacgcggtcgcggtcttcccgtcctgggaaacgctgccgcacgagcgg
ctgtcacccggcatcgacaccgtcggcacccggatgatggtgctgcgccggttggcccat
cccgacgacgcccgcctgggcccgccgctgcgagtcgtggtgaccgcggtccgttccctg
ctgcagccgatggccccgcaactcggccgccaggaaccgctgaccctgacggtgggagac
gagacgcccttcgaggacgtcgtccaacgtctcgtcgatctcgcctacacccgggtcgac
atggtcggccggcgcggcgagttcgccgtgcgcggcggcatcctggacgtcttcgcgccg
accgccgagcacccggtgcggatcgaattctggggcgacgagatcaccgagatgcggatg
ttctcggtcgccgaccagcgctcgattcccgagatcgacgtcgacgtgctggtcgcggtg
gcaagccgcgagctgctgctcaccgaggacgtccgggcccgcgcggccgagctggccggc
cagcatcccgcatcggagaacacggtcaccggcagcatcatcgacatgctggccaagctg
gccgaaggcatcccggtcgacggcatggaggcgctgcagtcggtgttgcagccggcgcag
gacggggcccctgcgttgctcaccgaccagctggccgagggaaccccggtgctcatctgc
gacccggagaaggtgcgcacccgcgccgccgacctgatcaagaccggccgggagttcctg
gaagcgtcgtggtcggtcgcggccctgggcaccgatgcgccggtcgatgtcgaacaactc
ggcgggtccggcttcgccgaactcgatgaggcgcgggaggcggcccgccgggccgggcat
ccgtggtggacgctgagccagctttccgacgaatcggcggtggaactggacatccgttcc
gcgccgtcggcgcgggggcatcagcacgacatcgagagcatcttcgccatgctgcgggcg
cacgtgtccaccggcggatacgccgccatggtggcgcccggcaccggcaccgcgcaccgc
atggtcgagcgcttggctgaatccgacatcgcggcggccatgctggaaccgggccagacg
cccaaacccggcgtcgtcggcgtcgtcaaaggccccttgcacgacggagtcgtcattccg
ggcgcgaacctggtcatcatcaccgaagccgacctgaccggcagccgggccaccgccacc
gaaggcaaacggctggccgcaaagcggcgcaacacggtcgacccgctggcgctgaccgcc
ggcgatctggtggtgcacgaccagcacggcatcggccgcttcgtcgagatggtggaacgc
accgtcggtggggcgcgccgggagtacctggtgctggaatacgcgtcgtccaaaaggggt
ggcgggtccgacaagctgtacgtcccgatggactcgctcgaccagttgtcgcgctacgtg
ggcgggcaggccccggcgctgagcaaactcggcggcagcgactggaccaacacgaaaacc
aaagcccgccgcgcggtgcgcgagatcgccggtgagctggtggcgctctacgcgaaaaga
caggccagccccggacacgcgttcgcccaggacacgccgtggcaggccgagatggaggac
gcgttcggcttcaccgaaaccatggaccagctcaccgcgatcaccgaggtcaagtccgac
atggagaagccgatcccgatggaccgggtgatctgcggcgacgtcggctacggcaagacc
gagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctg
gtgccgaccaccctgctggccgaccagcatctgcagaccttcaccgaccggatggccggc
ttcccggtgacggtcaaggggttgtccagattcaccgaccccgccgagtcccgcaaggtg
atcgaggggatggccgacggctcggtcgacatcgtgatcggcacccaccgcctgctgcag
accggggtgcgctggaaggacctcggtctggtggtcgtcgacgaggagcagcgcttcggc
gtcgagcacaaagagcacatcaaggccctgcgcagccacgtcgacgtgctgaccatgagc
gccaccccgattccgcgcacgctcgagatgagcctggccggcatccgcgagatgtcgacg
atcctgacgccgcccgaagagcgctacccggtgctgacctacgtcggcccgcacgacgac
aagcagatcgccgctgccctgcggcgcgagctgctgcgtgacgggcaggcgttctatgtg
cacaaccgggtgagttccatcgactccgccgccgcccgggtgcgcggtctggtgccggag
gcgcgggtcgtcgtcgcgcacgggcagatgcccgaggacctgctggaacgcaccgtgcag
gggttctggaaccgcgaatacgacatcctggtgtgcaccacgatcgtggaaaccggcctg
gacatctccaatgccaacaccctgatcgtcgaacgggccgacacgttcgggttgtctcag
ctgcaccagctgcgcggccgggtgggccgtagccgcgagcgcggctacgcctacttcctc
tacccgccgaacgcgccgctgaccgagacggcctatgaccggttggcgacgatcgcgcag
aacaacgagttgggcgcgggcatggcggtggcgctcaaggacctcgagatccggggcgcg
ggcaacgtgctcggcgtcgagcagtccgggcacgtcgccggggtcgggttcgacctctac
gtccggctggtcggcgaggccgtggaggcctaccgggcggcggccgacgggcagacggtg
accacgccggaggagacgaaagatgtgcgcatcgacctcccggtcgatgcgcacctaccg
ccggactacatctccagcgatcggctccggctggaggggtaccgccggctggcctcggcc
acttccgacagcgatatcgcggcggtcatcgaggagctgatcgaccggtatggtccgctg
cccgagcccgccgaacggctggtcgccgtggcgcggctacgcctgctgtgcaaggccgcg
gggatcaccgaggtcagcgccgtttcggccacgacagtgcggctgtcccctttgacgttg
ccggattccgcccaggttcggctggcccggatgtacccgggcggtcgctaccgtgcgacg
acgtctacggtgcaggttcccattccgcgtgcgggcgggatcggcgccggacacatccgc
gacgtcgagctggtgcagatggttgccgatttggtgactgcgctggccgggaaaccgcag
caagatgttggtatgagcaacacgccgggtaaggagcgacaggcctga
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