KEGG   Mycobacterium paragordonae: C0J29_25205
Entry
C0J29_25205       CDS       T06847                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mpag  Mycobacterium paragordonae
Pathway
mpag03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mpag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C0J29_25205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpag03400]
    C0J29_25205
Enzymes [BR:mpag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C0J29_25205
DNA repair and recombination proteins [BR:mpag03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C0J29_25205
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase Prim-Pol AlaDh_PNT_C
Other DBs
NCBI-ProteinID: AYE97593
UniProt: A0A386UAH6
LinkDB
Position
complement(5658301..5660601)
AA seq 766 aa
MGTAGPSSSSQQVKLTNADKVLYPATGTTKADIFDYYTGIAAVMLPHIAGRPATRKRWPN
GVDHDSFFEKQLASSAPDWLPRASVSHRSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWR
FVAEWTRAGESLAPGPATRLVFDLDPGEGVTMAQLADVAREVRDLIADIGLQTYPLTSGS
KGLHLYSPLDEPVSSRGASVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKVFVDWSQNNGA
KTTIAPYSLRGREHPTVAAPRTWEELDDPDLRQLSYDEVLDRVARDGDLLAELDRDAPVS
DRLSKYRSMRDASKTPEPVPRAKPATGHDNTFVIQEHHARRLHYDFRLERDGVLVSWAIP
KNLPETTAVNHLAVHTEDHPLEYAGFEGSIPKGEYGAGKVIIWDAGTYETEKFRDGPEKG
REKGEVIVTLHGNRISGRYALIQTNGDQWLAHRMKDQKVFDFDGLAPMLTTHGSVTGLKK
GPWAFEGKWDGYRLLVNADHGDLALRSRSGRDVTGEFPQLRSVAADLADHHVVLDGEVVA
LDQHGVPSFHQMQNRVRATRIEFWAFDLLYLDGRSLLRAKYSDRRRLLETLGEAGDLIVP
ELLPGDGDEALQYSAKQGWEGVVAKKRDSTYQPGRRSASWIKDKHWNTQEVVIGGWRQGE
GGRGGGIGALVVGIPGPDGLQFAGRVGTGFTDRDLANLKKTLAPLHTDESPFSTKLPARD
ARGVTFVRPSLVGEVRYSEWTPDNRLRQPSWRGLRPDKNPNEVVRE
NT seq 2301 nt   +upstreamnt  +downstreamnt
atgggtacggccggtccgtcgtcatcgtcgcagcaggtcaagctgaccaatgccgacaaa
gtgctctacccggccaccgggaccaccaaggccgacatcttcgactattacaccggtatc
gccgcggtgatgctgccgcacatcgccggacggcccgccacccgcaaacgctggcccaac
ggtgtggaccacgactcgttcttcgagaagcaactggcttcctcagcgccggactggttg
ccccgcgccagcgtcagccaccgctccggaaccaccacgtacccgatcatcgacagcgtg
gacgggctggcgtggattgcgcagcaggcggcactggaagtgcacgtgccgcaatggcga
ttcgtcgcggagtggacccgggccggggaaagccttgcgccgggcccggcgacccggctg
gtgttcgacctggacccgggcgaaggcgtgacgatggcgcagctggccgacgtggcgcgg
gaggtgcgggacctgatcgccgacatcgggttgcagacctatccgctgaccagtggcagt
aagggtctgcacctttacagcccgctggacgagccggtgagtagccgcggcgccagcgtg
ctggcgaaacgcgttgcgcaacaactggaaaagacgatgccgaagctggtcacctcgacg
atgaccaaaagcctgcgggccggcaaggtgttcgtggactggagccagaacaacggcgcg
aaaaccacgatcgcgccgtattcactgcgcgggcgcgaacatccgacggtcgcagcgcct
cgtacctgggaggaactcgacgaccccgatctgcgccaactcagctacgacgaggtgctg
gaccgggtggcccgcgacggtgatctgctggccgaactcgaccgtgatgcccccgtgtca
gacaggttgagcaagtaccgcagcatgcgcgacgcgtccaagactcccgagccggtgcca
agagcgaaacccgctaccggacacgacaatacgttcgtcatccaggagcaccacgcacgc
cggctgcactacgacttccggctggagcgcgacggcgtgttggtgtcctgggcgatcccg
aaaaatctgcccgagaccacggcggtcaaccacctggccgtgcacaccgaagaccacccc
ctggagtacgccggcttcgagggctccatccccaaaggtgagtacggtgcgggcaaggtg
atcatctgggatgccggcacctatgagaccgagaagttccgcgacgggccggaaaagggg
cgggaaaaaggggaggtcatcgtcaccctgcacggcaaccggatctcgggacgctacgcg
ctgattcagaccaacggtgaccaatggctggcgcaccggatgaaagaccagaaggtcttc
gatttcgacgggctcgcgccgatgctcaccacccacggatcggtcaccggtctgaagaag
ggcccgtgggcgttcgaaggtaagtgggatggttaccggctgctcgtcaatgccgaccac
ggcgaccttgcactgcggtcccgcagtgggcgcgacgtcacgggcgaatttccgcaatta
cgttcggtggcggcggatctcgccgatcatcacgtggtgctcgacggcgaggtcgtggcg
ctcgaccagcacggtgtgcccagcttccaccagatgcagaaccgggtgcgggccacccgc
atcgagttctgggcgttcgacctgttgtacctggacggccgctcgctgctgcgggccaag
tactccgatcggcggcggttgctggaaaccctgggcgaggcaggtgatctcatcgttccc
gagctgctgcccggtgacggtgacgaggcactgcagtattcggccaagcagggttgggag
ggcgtggtcgccaagaaacgggactcgacctatcagcccggccggcgctcggcgtcctgg
atcaaggacaagcactggaacacccaggaagtcgtcatcggcgggtggcggcagggagag
ggcggccgcggcggcggtatcggcgcgctggtcgtcggcatacccggccccgacggattg
cagttcgccgggcgggtcggcaccggattcaccgatcgcgacctggcgaacctcaagaag
acgctggccccgctgcacaccgacgaatcgccgttcagtacaaagcttcccgcccgagac
gcccgcggcgttacctttgtgcggccttcgttggtgggcgaggtgcgctacagcgagtgg
actccggacaaccggctgcgtcagcccagctggcgtgggctacggcccgacaagaatccg
aatgaggtggtgcgcgaatga

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