Mycobacterium paragordonae: C0J29_25205
Help
Entry
C0J29_25205 CDS
T06847
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpag
Mycobacterium paragordonae
Pathway
mpag03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C0J29_25205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpag03400
]
C0J29_25205
Enzymes [BR:
mpag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C0J29_25205
DNA repair and recombination proteins [BR:
mpag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C0J29_25205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Prim-Pol
AlaDh_PNT_C
Motif
Other DBs
NCBI-ProteinID:
AYE97593
UniProt:
A0A386UAH6
LinkDB
All DBs
Position
complement(5658301..5660601)
Genome browser
AA seq
766 aa
AA seq
DB search
MGTAGPSSSSQQVKLTNADKVLYPATGTTKADIFDYYTGIAAVMLPHIAGRPATRKRWPN
GVDHDSFFEKQLASSAPDWLPRASVSHRSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWR
FVAEWTRAGESLAPGPATRLVFDLDPGEGVTMAQLADVAREVRDLIADIGLQTYPLTSGS
KGLHLYSPLDEPVSSRGASVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKVFVDWSQNNGA
KTTIAPYSLRGREHPTVAAPRTWEELDDPDLRQLSYDEVLDRVARDGDLLAELDRDAPVS
DRLSKYRSMRDASKTPEPVPRAKPATGHDNTFVIQEHHARRLHYDFRLERDGVLVSWAIP
KNLPETTAVNHLAVHTEDHPLEYAGFEGSIPKGEYGAGKVIIWDAGTYETEKFRDGPEKG
REKGEVIVTLHGNRISGRYALIQTNGDQWLAHRMKDQKVFDFDGLAPMLTTHGSVTGLKK
GPWAFEGKWDGYRLLVNADHGDLALRSRSGRDVTGEFPQLRSVAADLADHHVVLDGEVVA
LDQHGVPSFHQMQNRVRATRIEFWAFDLLYLDGRSLLRAKYSDRRRLLETLGEAGDLIVP
ELLPGDGDEALQYSAKQGWEGVVAKKRDSTYQPGRRSASWIKDKHWNTQEVVIGGWRQGE
GGRGGGIGALVVGIPGPDGLQFAGRVGTGFTDRDLANLKKTLAPLHTDESPFSTKLPARD
ARGVTFVRPSLVGEVRYSEWTPDNRLRQPSWRGLRPDKNPNEVVRE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggccggtccgtcgtcatcgtcgcagcaggtcaagctgaccaatgccgacaaa
gtgctctacccggccaccgggaccaccaaggccgacatcttcgactattacaccggtatc
gccgcggtgatgctgccgcacatcgccggacggcccgccacccgcaaacgctggcccaac
ggtgtggaccacgactcgttcttcgagaagcaactggcttcctcagcgccggactggttg
ccccgcgccagcgtcagccaccgctccggaaccaccacgtacccgatcatcgacagcgtg
gacgggctggcgtggattgcgcagcaggcggcactggaagtgcacgtgccgcaatggcga
ttcgtcgcggagtggacccgggccggggaaagccttgcgccgggcccggcgacccggctg
gtgttcgacctggacccgggcgaaggcgtgacgatggcgcagctggccgacgtggcgcgg
gaggtgcgggacctgatcgccgacatcgggttgcagacctatccgctgaccagtggcagt
aagggtctgcacctttacagcccgctggacgagccggtgagtagccgcggcgccagcgtg
ctggcgaaacgcgttgcgcaacaactggaaaagacgatgccgaagctggtcacctcgacg
atgaccaaaagcctgcgggccggcaaggtgttcgtggactggagccagaacaacggcgcg
aaaaccacgatcgcgccgtattcactgcgcgggcgcgaacatccgacggtcgcagcgcct
cgtacctgggaggaactcgacgaccccgatctgcgccaactcagctacgacgaggtgctg
gaccgggtggcccgcgacggtgatctgctggccgaactcgaccgtgatgcccccgtgtca
gacaggttgagcaagtaccgcagcatgcgcgacgcgtccaagactcccgagccggtgcca
agagcgaaacccgctaccggacacgacaatacgttcgtcatccaggagcaccacgcacgc
cggctgcactacgacttccggctggagcgcgacggcgtgttggtgtcctgggcgatcccg
aaaaatctgcccgagaccacggcggtcaaccacctggccgtgcacaccgaagaccacccc
ctggagtacgccggcttcgagggctccatccccaaaggtgagtacggtgcgggcaaggtg
atcatctgggatgccggcacctatgagaccgagaagttccgcgacgggccggaaaagggg
cgggaaaaaggggaggtcatcgtcaccctgcacggcaaccggatctcgggacgctacgcg
ctgattcagaccaacggtgaccaatggctggcgcaccggatgaaagaccagaaggtcttc
gatttcgacgggctcgcgccgatgctcaccacccacggatcggtcaccggtctgaagaag
ggcccgtgggcgttcgaaggtaagtgggatggttaccggctgctcgtcaatgccgaccac
ggcgaccttgcactgcggtcccgcagtgggcgcgacgtcacgggcgaatttccgcaatta
cgttcggtggcggcggatctcgccgatcatcacgtggtgctcgacggcgaggtcgtggcg
ctcgaccagcacggtgtgcccagcttccaccagatgcagaaccgggtgcgggccacccgc
atcgagttctgggcgttcgacctgttgtacctggacggccgctcgctgctgcgggccaag
tactccgatcggcggcggttgctggaaaccctgggcgaggcaggtgatctcatcgttccc
gagctgctgcccggtgacggtgacgaggcactgcagtattcggccaagcagggttgggag
ggcgtggtcgccaagaaacgggactcgacctatcagcccggccggcgctcggcgtcctgg
atcaaggacaagcactggaacacccaggaagtcgtcatcggcgggtggcggcagggagag
ggcggccgcggcggcggtatcggcgcgctggtcgtcggcatacccggccccgacggattg
cagttcgccgggcgggtcggcaccggattcaccgatcgcgacctggcgaacctcaagaag
acgctggccccgctgcacaccgacgaatcgccgttcagtacaaagcttcccgcccgagac
gcccgcggcgttacctttgtgcggccttcgttggtgggcgaggtgcgctacagcgagtgg
actccggacaaccggctgcgtcagcccagctggcgtgggctacggcccgacaagaatccg
aatgaggtggtgcgcgaatga
DBGET
integrated database retrieval system