Mus pahari (shrew mouse): 110320106
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Entry
110320106 CDS
T05929
Symbol
Usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
mpah01002
]
110320106 (Usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mpah04121
]
110320106 (Usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mpah04147
]
110320106 (Usp13)
Enzymes [BR:
mpah01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110320106 (Usp13)
Peptidases and inhibitors [BR:
mpah01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110320106 (Usp13)
Ubiquitin system [BR:
mpah04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110320106 (Usp13)
Exosome [BR:
mpah04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110320106 (Usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
110320106
NCBI-ProteinID:
XP_021051682
Ensembl:
MGP_PahariEiJ_G0026368
LinkDB
All DBs
Position
4:27472012..27577158
Genome browser
AA seq
858 aa
AA seq
DB search
MQRRGALFSVPGGGGKMAAGDLGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGL
YVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHIREKVSGASGGALPKRRNSKIFLDLDM
DDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDAW
ENEVPVSKYANNLVQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGN
GHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTE
NGLRDNDIKPRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQR
AYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQN
GISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQ
CCQTRKVRYTERVDYLMQLPVAMEAATNKDELITYELMRREAEANRRPLPELVRAKIPFS
ACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVS
IDMPDLLDISHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLA
EMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAMPGYGGAGASVFGATGLD
NQPPEEIVAIITSMGFQRSQAAQALQATNHNLERALDWIFSHPEFEEDSDFVIEMENNAN
ANIMSEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYNDHKVCAS
ERPPKDLGYMYFYRRIPS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccggggcgccttgttcagcgtgcccggcggcggcgggaagatggctgcaggg
gacctgggcgagctgctagtgcctcatatgcccacgatccgcgtgcccaggtcgggggac
cgcgtctataagaacgagtgcgccttctcctacgactccccgaactctgaaggtggactc
tatgtatgcatgaatacctttttggcctttggaagggaacacgttgaaagacattttcgg
aaaactggacagagtgtatacatgcacctgaagaggcacatacgagagaaggtaagcgga
gcctctggtggagctttacccaaaaggaggaattccaaaatatttttagatctagatatg
gatgacgatttaaatagtgacgattacgaatatgaagacgaagccaaacttgttatattc
ccagaccactatgaaatagcccttcctaacattgaggagttaccagctctggtgacaatc
gcttgcgatgcagtgctcagctcaaagtccccgtacaggaagcaggatccagacgcgtgg
gaaaacgaagtgccagtatcgaagtatgccaacaacctcgtgcaactggacaacggggtc
aggattcctcccagtggctggaagtgcgcccgatgtgacctgcgggagaacctctggttg
aatctgactgacggctctgttctgtgtgggaagtggttttttgacagctcagggggtaat
ggccacgcactggagcattacagggacatgggctatcctctggctgtgaagctgggcacc
atcacacctgatggggcagatgtttattcttttcaagaagaggggcctgtttcggatcct
catttggccaaacacttagcacatttcgggatcgacatgcttcacacgcaagggacagag
aatgggctccgggacaatgacatcaagccgagagtcagcgagtgggaagtgatccaggag
tccgggacaaagctgaagccgatgtacggcccagggtacacgggcctgaagaacctgggc
aacagttgctacctcagttctgtcatgcaggccatcttcagcatcccagagttccagaga
gcgtacgtaggaaacctcccaaggatatttgactactcaccgttagatccaacgcaggac
ttcaacacacagatgactaagttgggacatggcctcctctctggccagtactcgaagcct
ccagtgaaatctgagctcattgaacaggtgatgaaggaggaacacaagcctcagcagaat
gggatctccccacgaatgttcaaggcctttgtcagcaagagccacccggaattctcctcg
aacagacagcaggatgcccaggagtttttcttgcatttggtcaatctggtagagaggaat
cgaattggctcagaaaacccaagtgatgttttccggtttttggtggaggagcgaatccaa
tgctgtcagaccagaaaggtccgctacacggagagggtggactacctaatgcagttacct
gtggccatggaggcagcaaccaacaaagatgagctgatcacctatgaactcatgcggagg
gaggcagaagccaacagaagacccctacctgagctggtgcgagccaagatcccattcagt
gcctgccttcaggcctttgctgaaccagacaatgtggatgatttctggagcagcgctctg
caggccaagtctgcaggggtcaaaacttctcgctttgcctcattccctgaatacttggta
gtgcagataaagaagttcacttttggtcttgactgggttcccagaaaatttgatgtttct
attgatatgccagacctactagacatcagccatctcagggccaggggcttgcagccaggg
gaagaggagcttcctgacatcagtccccccatagtcattcccgatgactcaaaagaccgc
ttgatgaaccagttgatagacccctcagacattgatgagtcttcggtgatgcagctggct
gagatgggcttcccgttggaagcctgcaggaaggctgtgtacttcactgggaacactgga
gctgaggtggccttcaactggattatcgtgcacatggaggagcctgactttgctgaacca
ctggccatgcctgggtatggaggggctggggcctctgtctttggtgctactggattggac
aaccaacctcctgaggaaatcgtagctattatcacctcgatgggcttccagcgaagtcag
gcagcgcaggctctacaagcaacgaatcataacctggaaagagcactggactggatcttc
agccaccccgagtttgaagaggacagtgactttgtgatcgagatggagaacaatgcgaac
gccaacatcatgtctgaggccaagccagaggggcccagagtgaaggatgggtctggaatg
tacgagttgtttgcattcatcagtcacatggggacatctacaatgagtggccactatgtt
tgccatatcaagaaggagggacgatgggtgatctacaatgaccacaaagtttgtgcctca
gaaaggccccccaaagacctgggctatatgtacttttaccgcaggataccaagctaa
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