Mus pahari (shrew mouse): 110333130
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Entry
110333130 CDS
T05929
Symbol
Thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03013
Nucleocytoplasmic transport
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110333130 (Thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
110333130 (Thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110333130 (Thoc1)
03041 Spliceosome [BR:
mpah03041
]
110333130 (Thoc1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
110333130 (Thoc1)
Spliceosome [BR:
mpah03041
]
Complex C
Other components
EJC/TREX
110333130 (Thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110333130 (Thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
HsdM_N
Motif
Other DBs
NCBI-GeneID:
110333130
NCBI-ProteinID:
XP_021070233
Ensembl:
MGP_PahariEiJ_G0018726
LinkDB
All DBs
Position
15:6150767..6188552
Genome browser
AA seq
657 aa
AA seq
DB search
MSPTPALFSLPEARTRFTKSTREALNNKNIKPLLTAFSQLPGSENEKKCTLDQAFRGVLE
EEIINHSACENVLAIISLAIGGVTESVCTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAPE
DFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ESEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPITGEQIESFANKLGEQWKILAPYLEIKDSDIR
QIECDSEDMKMRAKQLLVAWQDQEGVHATTDNLISALNKSGLSDLAESLTNDTETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacgccggcgcttttcagtttgcccgaggcgcggacgcgatttacgaaatct
accagagaggccttgaataacaaaaatatcaagccgttgttgactgccttcagtcagtta
cctggcagtgaaaatgaaaaaaaatgtacccttgaccaagctttcagaggtgttctggaa
gaagaaattataaatcattccgcatgcgagaacgttttagctattatttctcttgctatt
gggggagtaactgaaagtgtttgtactgcgtccacaccatttgtgctattgggagatgtc
ttagactgccttcctttggatcagtgtgacacaatattcacttttgttgaaaaaaatgtt
gctacttggaagtcaaatacattctattctgctggcaaaaattatttactgcgtatgtgc
aatgatctcctcagaagattgtctaaatctcagaatacagttttctgtggaagaattcag
ctctttctggccaggctttttcctctatccgagaaatcaggtcttaatttgcagagtcag
tttaacctggaaaatgtcactgttttcaataccaatgagcaggagagcaccctgggtcag
aagcacactgaggatagagaggaagggatggatgtagaagaaggtgaaatgggagatgat
gaagccccgacaacgtgttctattccaattgattacaacctgtatagaaaattctggtca
cttcaggattacttcaggaacccagtacaatgctatgagaagatttcctggaaaactttt
ctcaagtattctgaagaagttttagctgtttttaaaagttataaattagatgatactcaa
gcctccaggaaaaagatggaagaattgaaaacaggaggagagcatgtgtacttcgcaaag
tttttaacgagtgagaagttgatggatttacaactgagtgacagtaactttcgtcgacac
atcctgttgcagtatctcattttatttcaatatctcaagggacaggtcaaattcaaaagc
tcaaattatgttttaactgatgagcaatcactctggattgaagatactacaaaatcagtc
taccaactgctatctgaaaatccccctgatggagaaagattttcaaagatggtagagcat
atattaaacactgaggaaaattggaactcatggaaaaatgaaggttgcccaagttttgtt
aaagaaagagcatcagataccaagcccacaagagtggtgcggaagagagcagccccagaa
gacttcttaggcaaagggcccaacaagaaaattctgattggaaatgaggagctaacaagg
ctttggaatctctgtcctgataatatggaagcctgtaaatcagagacaagagaatacatg
ccaactttggaggagttctttgaagaagctattgaacaagcagatcctgaaaacatggtt
gaaagtgaatataaagccgtaaataattcaaattatggatggagagctcttagactctta
gcccggagaagccctcacttcttccagccaaccaaccagcagtttaagagtctaccagag
tatctagaaaacatggtgataaaactagccaaggaactaccacccccttctgaagaaata
aaaacaggtgaagatgaagatgaagaagataatgatgctttactaaaggaaaatgaaagt
ccagatgttcggcgagataaacctataacaggggagcagatagagtcatttgccaacaaa
cttggtgagcagtggaagattttggctccttacctggaaattaaagactccgatattagg
cagattgagtgtgacagtgaagacatgaagatgagagccaagcagctccttgttgcctgg
caagatcaagaaggagttcatgcaacaactgataacctgattagtgcactaaacaagtct
ggattaagtgaccttgcagaaagtctaactaatgacactgaaacaaacagttag
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