Mus pahari (shrew mouse): 110336646
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Entry
110336646 CDS
T05929
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03030
DNA replication
mpah03410
Base excision repair
mpah03420
Nucleotide excision repair
mpah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110336646 (Lig1)
03410 Base excision repair
110336646 (Lig1)
03420 Nucleotide excision repair
110336646 (Lig1)
03430 Mismatch repair
110336646 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpah03032
]
110336646 (Lig1)
03400 DNA repair and recombination proteins [BR:
mpah03400
]
110336646 (Lig1)
Enzymes [BR:
mpah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110336646 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
110336646 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
110336646 (Lig1)
DNA replication proteins [BR:
mpah03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
110336646 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
110336646 (Lig1)
DNA repair and recombination proteins [BR:
mpah03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
110336646 (Lig1)
NER (nucleotide excision repair)
Other NER factors
110336646 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
110336646 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
110336646
NCBI-ProteinID:
XP_021074987
Ensembl:
MGP_PahariEiJ_G0021067
LinkDB
All DBs
Position
19:10065867..10102396
Genome browser
AA seq
933 aa
AA seq
DB search
MRKKEQERKGETSAANMQRSIMSFFQPTKEGKVKKPEKETPSSIREKEPPPKVALKERNQ
VVPERDSPVKRTGRKVAQVLSSEGEDEDEAPGIPKVQKPVSDSEQSSPPSPDTCPENSPF
FNRSPSMDISPSGFPKRRTARKQLPKRTIQDTLEEQNEDKNKTAKKRKKEEEETPKESLT
EAEDIKQKEEKEGDQPIVPSEPTKSSESVTLTKTENIPVCKAGVKLKPQEEEQSKPPARG
AKTLSSFFTPRKPAVKTEVKQEESGTLRKEETKGTLDPTNYNPSKNNYHPIEDACWKHGQ
KVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGL
ELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSGVF
TKFCDIARLTGSASMAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQ
AVSLTPPGQEFPTAVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGL
EHLPEHCKLSPGVPLKPMLAHPTRGVSEVLKRFEEADFTCEYKYDGQRAQIHVLEGGEVK
IFSRNQEDNTGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKE
VDASEIQVQVCLYAFDLIYLNGESLVRQPLSRRRQLLRENFVETEGEFVFATSLDTKDTE
QIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAY
LGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVR
IDGAVAPDHWLDPSIVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFVRVREDKQPE
QATTSDQVATLYRKQSQIQNQQSSDLDSDIEDY
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaaagagcaagagaggaaaggagagacttctgctgccaacatgcagagaagt
attatgtcattttttcaacccacaaaagaaggtaaagtgaagaagccggagaaggagaca
cccagcagcatcagagagaaggaaccccctccaaaggtggcgctgaaggagaggaatcaa
gtggtgcccgagcgtgattctccagtgaagaggacaggaaggaaggtagcccaggttctg
agcagtgaaggggaggacgaagatgaagcccctggcatccccaaagtccagaagcctgtg
tcagactctgaacagagctctcctcccagccctgacacatgtccagagaacagtcctttc
ttcaatcgcagcccctccatggacatctccccatcaggattcccaaagcgtcgaactgca
cggaaacagctccccaaacggacaattcaagacactcttgaggagcagaatgaggacaaa
aacaaaacagctaagaaaaggaagaaagaagaagaagagaccccaaaagaaagcctcaca
gaggctgaagacataaaacagaaggaagaaaaagaaggggaccagcccatagtcccctct
gagcccacaaagtcctctgaatcagtaaccttgacaaagacagagaacattccagtgtgt
aaggcaggagtgaaactgaagcctcaggaagaggaacagagcaaacctcctgctagaggt
gccaagacactgagcagtttcttcacaccccgaaaaccagcagtgaaaactgaagtcaaa
caagaagagtcaggcactctaaggaaggaagagaccaagggaaccctggatccaacaaat
tataatccttccaagaataactatcatcctattgaagatgcctgctggaaacatggccag
aaggtcccttttctcgctgtggcccggacatttgagaagattgaggaggtttctgctagg
ctcaagatggtggagacattgagcaacctgctgcgctccgtggtggccctgtcccctcca
gacttgctccctgttctctatctcagcctcaaccgccttgggccacctcagcagggacta
gagctgggtgttggtgatggtgtcctcctcaaggcagttgcccaggccacaggtcgtcag
ctggagtccatccgggctgaggtagctgagaagggggatgtggggctggtggccgagaac
agccgcagcactcagagactcatgctgcctccacctccacttactgtttctggagtcttc
accaaattttgtgacattgcccggctcactggcagtgcttccatggccaagaagatggac
attatcaagggcctttttgttgcctgccgccactcagaagcccggttcattgccaggtcc
ctaagtgggcggctgcgccttggcctagctgagcagtcggtgctggctgctcttgcccag
gctgtgagcctcacaccccctggccaagaatttcccacagccgtggtggatgctgggaag
ggcaaaacagcagaggccagaaagatgtggttggaagaacaaggcatgatcttgaagcag
accttctgtgaggttcctgacctggatcgaatcatccctgtgctgctggaacatggcctg
gaacatctcccagagcactgcaagctgagcccaggggtccctcttaaaccaatgctggct
catcccactcggggtgtcagtgaggtcctaaaacgctttgaggaggccgacttcacctgc
gaatataaatatgatgggcagcgagcacagatacacgttctggaaggtggagaagtgaag
atcttcagcaggaaccaggaagacaacacaggaaagtatcctgacattatcagccgcatc
cccaagattaaacacccctcagtcacatctttcattctggacactgaggctgtggcctgg
gaccgagaaaagaagcagatccaaccattccaagtgctcaccacgcgcaagcgcaaggag
gttgatgcatcggagatacaggtgcaagtgtgtctgtatgcttttgacctcatctacctc
aacggagagtccctggttcgccagcctctgtctcgacgcaggcagctgctccgtgagaac
ttcgtggaaacagagggtgagtttgtcttcgccacctccttggacaccaaggacaccgag
cagattgctgagttcttggagcagtcagtgaaggactcctgtgagggcctgatggtgaag
accttggatgttgatgccacttatgagattgccaagaggtcacacaactggctcaagctg
aagaaggactaccttgatggtgtgggcgacactctggaccttgtggtgattggcgcctac
ctgggccgagggaagcgggctggccggtatggaggcttcctgttggctgcctacgatgag
gagagtgaagagcttcaggctatatgcaagctgggaactggattcagtgacgaggaactg
gaggaacatcaccagagcctgcaggccctggtattgcctaccccacgcccctatgtgagg
attgatggggcagtggccccagaccattggctggacccaagcattgtgtgggaggtgaag
tgtgctgatctttccctgtcccccatctaccctgctgcacggggcctggtggacaaagaa
aaagggatctctcttcgttttcctcggttcgtccgtgtccgtgaagacaagcagccagag
caggccactaccagtgaccaggttgccactttgtatcggaagcagagtcagattcagaac
caacaaagctcagacttggactccgacattgaagactattaa
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