Mus pahari (shrew mouse): 110338080
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Entry
110338080 CDS
T05929
Symbol
Prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04120
Ubiquitin mediated proteolysis
mpah04137
Mitophagy - animal
mpah04141
Protein processing in endoplasmic reticulum
mpah05012
Parkinson disease
mpah05014
Amyotrophic lateral sclerosis
mpah05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110338080 (Prkn)
04120 Ubiquitin mediated proteolysis
110338080 (Prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
110338080 (Prkn)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
110338080 (Prkn)
05014 Amyotrophic lateral sclerosis
110338080 (Prkn)
05022 Pathways of neurodegeneration - multiple diseases
110338080 (Prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mpah04131
]
110338080 (Prkn)
04121 Ubiquitin system [BR:
mpah04121
]
110338080 (Prkn)
03029 Mitochondrial biogenesis [BR:
mpah03029
]
110338080 (Prkn)
Enzymes [BR:
mpah01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
110338080 (Prkn)
Membrane trafficking [BR:
mpah04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
110338080 (Prkn)
Aggrephagy
Other aggrephagy associated proteins
110338080 (Prkn)
Xenophagy
Other xenophagy associated proteins
110338080 (Prkn)
Ubiquitin system [BR:
mpah04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
110338080 (Prkn)
Mitochondrial biogenesis [BR:
mpah03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
110338080 (Prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
110338080
NCBI-ProteinID:
XP_021076947
Ensembl:
MGP_PahariEiJ_G0023371
LinkDB
All DBs
Position
21:complement(4809918..5978661)
Genome browser
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQSCD
LEQQSIVHIIQRPQRTSHETNASGGDKPQSTSEGSVWESRSLTRVDLSSHTLPADSVGLA
VILDTDSKRDSEAARGPVKPTYNSFFVYCKGPCHKVQPGKLRVQCGICKQATLTLAQGPS
CWDDVLIPNRMSGECQSPDCPGTRAEFFFKCGAHPTSDKDTSVALNLIASNRRSIPCIAC
TDVRSPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDAQLGYSLPCVAGCPNSLIKEL
HHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEQDQRKVTCEGGNGLGCG
FVFCRNCKETYHEGDCDSLFEPSGATSQAYRVDGRAAERARWEEASKETIKKTTKPCPRC
SVPTEKNGGCMHMKCPQTQCKLEWCWNCGCEWNRACMGDHWFDV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagctatggcttcccagtggaggtcgattcagac
accagcatcttccagctcaaggaagtggttgctaagcgacagggggttccagctgaccag
ctgcgggtgatttttgccgggaaggagcttccgaatcacctgacggtgcagagctgtgac
ctggaacagcagagtattgtacacataatacagagaccacagaggacgagtcatgaaaca
aatgcatctggaggggacaaaccccagagcacctcagagggctctgtatgggagtccaga
agcttgacgcgagtggacctcagcagccataccctgccggcggactccgtggggctagcg
gtcattctggacacagacagtaagagggattcagaagcagccagaggtccagttaaaccc
acctacaacagctttttcgtctactgcaaaggcccctgtcacaaggtccagcctggaaag
ctccgagttcagtgtggcatctgcaaacaagcaaccctcaccctggcccagggcccatct
tgctgggatgatgtcttaattccaaaccggatgagtggtgagtgccagtctccagactgc
cctggaaccagagctgaatttttctttaaatgtggagcacacccaacctccgacaaggac
acatcggtagctttgaacctgatcgccagcaacaggcgcagcatcccctgcatagcgtgc
acagatgtcaggagcccggtcctggtcttccagtgtaaccaccgccacgtgatctgtttg
gactgtttccacttgtattgtgtcacaagactcaacgatcggcaatttgtccacgatgct
cagcttggctactccctgccgtgtgtggctggctgtcccaactccctgattaaagagctc
catcacttcaggatccttggagaagagcagtacaataggtaccagcagtatggtgccgag
gagtgcgtgctgcaaatgggaggggtgttgtgcccccgtcctggctgcggagccggactg
ctacccgaacaggaccagaggaaagtcacctgtgaagggggcaacggcctaggctgcggg
tttgttttctgccggaactgtaaggaaacataccatgaaggggattgtgactcactgttc
gaaccctcgggagcaacttcccaggcctaccgggtggacggaagagccgcggagcgagct
cgctgggaggaggcctccaaggaaaccatcaagaagaccaccaagccttgtccccgctgc
agtgtgccaactgaaaaaaatggaggatgtatgcacatgaagtgtcctcagacccagtgc
aagctggagtggtgttggaactgtggctgtgagtggaaccgagcctgcatgggggatcac
tggtttgacgtgtag
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