Mycolicibacillus parakoreensis: MIU77_03915
Help
Entry
MIU77_03915 CDS
T07959
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpak
Mycolicibacillus parakoreensis
Pathway
mpak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIU77_03915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpak03400
]
MIU77_03915 (mfd)
Enzymes [BR:
mpak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIU77_03915 (mfd)
DNA repair and recombination proteins [BR:
mpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MIU77_03915 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ULN53495
LinkDB
All DBs
Position
798278..801943
Genome browser
AA seq
1221 aa
AA seq
DB search
MTSPGQPSPATPLAGLVELALAAPVFTGLTETAAAGPARLDLVGPASARPFVAAALARAT
PLLVVTATGREADDLTAELRAVLGDAAALFPSWETLPHERLSPGVDTVGARMLVLRRLAH
PHDPALGPPLQVVVTTARSLLQPMAAGLGDIEPVTVRVGAEVPFEAVIARLVELAYTRVD
MVGRRGEFAVRGGILDVFAPTAEHPVRIEFWGDEVTEMRLFAVADQRSIPDIEVDTLVAV
PCRELLLTAEVRARAAELAGAHRSSGDTSITGGVGDLLAKLGEGIPADGMEALLPVLRPD
ALTLLTGELPAGAAVLVCDPEKVRTRAGDLIATGREFLEASWSVAALGADAPIDVEQLGG
SGFAELAEVSAAAEAGGHRWWTLNQLHDPDATELDVRAAPTAQDRHGGLSGLEALFAMLR
GHIATGGVAAVVTPGIGTARRTVEQLSESDTPATVLEPGVTPAPGAVAVLAGPLHDGLIV
PGAELVILTEADLTGNRATAPTGKRLAAKRRNTVDPLALSAGDLVVHDQHGIGKFVEMTE
RTVGGARREYVVLEYASAKRGGGTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTK
TKARRAVAEIATELVALYAKRQAAPGHAFAADSPWQAEMEDAFGFTETVDQLTAITDVKA
DMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGRQVAVLVPTTLLADQHLQTFTERMA
GFPVTVEGLSRFTDAAASRATIDGMADGSVDIVIGTHRLLQTGVRWKDLGLIIVDEEQRF
GVEHKEHIKALRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGAHD
DKQIAAALRRELLRDGQAFYVHNRVRSIDEAAARVRALVPEARVAVAHGQMPEDLLESTV
QAFWNREHDILVCTTIVETGLDISNANTLVVERADTFGLAQLHQLRGRVGRGRERGYAYF
LYPRESPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDL
YVRLVGEAVEAYRAAADGQTVVTEEPKEVRIDLPVDAHLPPDYIDSDRLRLEAYRRLAAA
ADDTAVAGVVEELIDRYGPLPTPARLLVAVARLRLLCRGHGVTEVATVSETTLRLAPVVL
PDSAQVRLKRVYPGARYRATTATVAVPIPRAGSGVGAPRLRDLELVQMVADLLTALDGKP
AGSVDITAESVRAGSGGAGEG
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgacctccccggggcagcccagcccagcgaccccgctcgccggcctggtggagctggcg
ctggccgcgccggtgttcaccgggctgaccgagaccgccgcggccgggcccgcacgcctg
gacctggtcggaccggccagcgcgcggccgttcgtcgcggccgcactcgcccgggccacc
ccgctgctggtggtcaccgccaccggccgcgaagccgacgacctcaccgccgagctgcgt
gcggtgctcggcgacgccgccgcgctgttcccgtcctgggagaccctgccgcacgagcgg
ctctcccccggggtcgacaccgtcggggcgcgcatgctggtgctgcgccggctggcccac
ccgcacgatccggccctgggcccgccgcttcaggtggtggtgaccaccgcgcgttcgctg
ctgcagccgatggccgccgggctcggcgacatcgagccggtcaccgtgcgggtcggcgcc
gaggtgccgttcgaggcggtcatcgcccggctggtggaactggcctacacccgggtcgac
atggtcggccggcgcggcgagttcgcggtgcgcggcggcatcctcgacgtgttcgcgccg
accgccgaacacccggtgcgcatcgagttctggggcgacgaggtcaccgaaatgcggttg
ttcgccgtggccgaccagcggtcgatccccgacatcgaggtcgacacgctcgtcgcggtg
ccgtgccgcgagttgctgctcaccgccgaggtgcgcgcccgcgcggccgagctggccggc
gcccaccggtcctccggcgacacgtcgatcaccggcggggtcggcgacctgctggccaaa
ctgggcgagggcatccccgccgacggcatggaggcgctgctgccggtgctgcgccccgac
gcgttgaccctgctcaccggcgagctgccggccggggccgcggtgctggtctgcgacccg
gagaaggtccgcacccgcgcgggcgacctgatcgccaccggacgggagttcttggaggcc
tcctggtcggtggccgccctcggcgccgacgcgccgatcgacgtcgaacagctcggcgga
tccgggttcgccgagctcgccgaggtgagcgccgccgccgaggccggcggacaccggtgg
tggacgctgaaccagctgcacgatcccgacgcgaccgaactcgacgtgcgcgccgcgccc
accgcccaggaccgccacggcgggctgagcggcctcgaggcgctgttcgcgatgctgcgc
ggccacatcgccaccggcggggtggccgcggtggtcacccccggcatcggcaccgcccgg
cgcaccgtggagcaactcagcgaatccgacactcccgcaaccgtgttggagcccggtgtc
accccggcaccgggggcggtggcggtgctcgccggccccctgcacgacgggctgatcgtc
cccggcgccgagctggtcatcctcaccgaggccgacctgaccggcaaccgcgccaccgcc
ccgaccggcaaacggctggccgccaagcgccgcaacaccgtcgacccgctggcgctgagc
gccggcgacctggtcgtccacgaccagcacggcatcggcaagttcgtcgagatgaccgaa
cgcaccgtcggcggggcgcgccgcgaatacgtggtgctcgagtacgcctcggccaaacgc
ggcggcggcaccgacaagctctacgtgccgatggactccctcgaccagctctcccgctac
gtcggcgggcaggccccggcgctgtcgcggctcggcggcagcgactgggccaacaccaag
accaaggcgcggcgcgcggtcgccgagatcgccaccgaactggtcgcgctctacgccaaa
cgccaggccgcccccggccacgcgttcgccgcggacagcccctggcaggccgagatggaa
gacgcgttcgggttcaccgagaccgtcgaccagctcaccgcgatcaccgacgtcaaggcc
gacatggagaaaccggtgccgatggaccgggtgatctgcggcgacgtgggctacggcaag
accgagatcgcggtgcgtgcggcgttcaaggccgtgcaggacggcagacaggtcgcggtg
ctggtgcccaccacgctgctggccgaccagcacctgcagacgttcaccgagcggatggcc
ggcttcccggtcaccgtcgaggggctgtcgcggttcaccgacgccgcggcgtcgcgcgca
acgatcgacgggatggccgacgggtcggtcgacatcgtgatcggcacccaccggctgctg
cagaccggggtgcgctggaaggacctcgggctgatcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcacatcaaggcgttgcgcagccacgtcgacgtgctgacgatg
agcgccacccccatcccgcgcaccctggagatgagcctggccggcatccgggagatgtcg
acgatcctcaccccgcccgaggagcgctacccggtgctcacctacgtcggggcccacgac
gacaagcagatcgccgcggcgctgcgccgcgaactgctgcgcgacgggcaggcgttctac
gtgcacaaccgggtgcgttcgatcgacgaggccgccgctcgggtgcgcgcgctggtcccg
gaggcccgggtggccgtggcccacggtcagatgcccgaggacctgctggaatcgaccgtg
caggcgttctggaaccgcgaacacgacatcctggtgtgcaccacgatcgtcgagaccggg
ctagacatctccaacgccaacaccctggtcgtcgaacgggccgacaccttcgggctcgcc
cagctgcatcagctgcgcggccgggtgggccggggccgtgaacgcggctacgcctacttt
ctgtacccgcgggagagcccgctgaccgagaccgcccacgaccggctggccaccatcgcc
cagaacaacgagctgggcgccggcatggcggtggcgatgaaggacctggagatccgcggg
gccggcaacgtgctcggtgtcgaacagtccgggcacgtcgccggggtcgggttcgacctg
tacgtgcggctggtcggcgaggccgtggaggcctaccgcgccgccgccgacgggcagacc
gtggtcaccgaggaacccaaggaggtgcgcatcgacctgccggtggacgcccacctgcca
ccggactacatcgacagcgaccggctgcgcctggaggcctaccggcggctggccgccgcc
gcagacgacaccgcggtcgccggggtcgtcgaggagctgatcgaccggtacgggccgctg
cccaccccggcgcggctgctggtggcggtggcccggctgcggctgctctgccgcggccac
ggggtcaccgaggtcgcgacggtctcggagaccacgctgcggctggccccggtggtgctg
ccggactccgcgcaggtgcggctcaaacgggtctacccgggggcgcggtaccgggccacc
accgccaccgtggcggtgccgatcccgcgggccggctccggtgtcggcgcgccacggctg
cgggatctggagttggtgcagatggtcgccgatctgctcaccgcgttggacggcaaaccg
gccggctcggttgatataaccgcggagagcgtccgggccggatccgggggcgccggagag
gggtag
DBGET
integrated database retrieval system
