Microbacterium paraoxydans: IZR02_04985
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Entry
IZR02_04985 CDS
T08796
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpao
Microbacterium paraoxydans
Pathway
mpao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IZR02_04985 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpao03400
]
IZR02_04985 (mfd)
Enzymes [BR:
mpao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IZR02_04985 (mfd)
DNA repair and recombination proteins [BR:
mpao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IZR02_04985 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3701
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QXE30859
LinkDB
All DBs
Position
1060498..1064064
Genome browser
AA seq
1188 aa
AA seq
DB search
MTVPGILRALEEASLYRDALAWAHTDADLGLVDGLDAPVLAGLLAKRAAAGHPAALLAVV
PTGRRAESVAQALETYVPDAEVLTFPAWETLPHERLSPSPDTVGLRLQTLRRVAEWSGER
PLVVVASVRAALQPIAGNLGDIVPLELTVGSRGNELDHVAEQLVERAYSRVDMVSRRGEF
AVRGGILDVFPPTSEHPYRVEFFGDEIDQIRAFSVADQRSLPGDVPRVDLPPSRELLLTA
EVRERARALIGGFPAISGMLEKMAEGIPVEGMESLLPAVAGPLKSLVEYLPEGTATAVID
PERSTARALTLGETNREFLDAAWSAATSGASAPIDLGAGDFLTIADLREVVRDRGGVWWR
LSPFGIGDATAESVEAATVIPSFHGNVDGAIAFVDAKVADGWRVVVLATGHGLVDRARDV
LSDRGIAARVVETIADAPDPGVATLTVGGVEAGFQVPEAKLAVLTDNEFYGRTIGGDQRV
VKKLASRRKNVVDPLQLKQGDFVVHATHGIGRFVEMTQREVSTGGRNAAKSVRDYLVLEY
APSKRGYPGDKLFVPTDQLDLLSKYVGGEAPTLSKMGGSDWAQAKGKARKAVRDIAVELV
KLYSARMSAKGYAFGPDTPWQRELEEAFPFAETQDQLQTIDEIKADMERPIPMDRLLSGD
VGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERFAGFPVKVRPLSRFQTD
KEARLTLQGLLDGSVDMVIGTHRILTEQVLFKDLGLMIIDEEQRFGVEHKDALKKMKTNV
DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGPRSDKQIAAAIRREILRE
GQVFFVHNRVQSIQRVAAELAELVPEARIAVAHGQMGEHALEQVVDDFWERKFDVLVSTT
IIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDDMKPLSETAADR
LQTIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVATFRGE
EVETGQELRLELPLDARIPEDYIDSERLRLEAYQKLSAASAATAKDDAIDLVVEELVDRY
GTPPEEVTGLVSIARLRRRAARAGLTDVVAMGSNLRLAPARLEDSIKVRLQRLYPKAKLV
SGGEALVVPMPTVPAAVGVGVEPLPDAELLAWVDQLFTAIFPEPAKPE
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
gtgactgttccggggattctgcgcgccttggaagaggcgtctctgtatcgtgacgctctc
gcctgggcgcacaccgacgccgacctcggcctggtcgacgggctcgacgcgcccgtgctc
gccggtctgctcgccaagcgcgcggcggccggccacccggcggcgctgctggccgtggtg
cccacggggcgccgcgcggaatcggtcgcgcaggccctggagacgtacgtcccggacgcc
gaggtgctcaccttccccgcctgggagacgctgccgcacgagcgcctcagccccagcccg
gacacggtcggcctgcgactgcagaccctgcggcgcgtcgccgagtggtccggggagcgt
cccctcgtggtcgtggcctccgtgcgcgccgcgctccagcccatcgccgggaacctcggc
gacatcgtgccgctcgagctgaccgtgggcagccgcggcaacgagctcgaccacgtcgcc
gagcagctcgtggaacgggcgtactcccgcgtcgacatggtgtcgcgacgaggcgagttc
gccgtccgcggcggcatcctcgacgtcttccctcccacgtcggagcacccctaccgcgtg
gagttcttcggcgacgagatcgatcagatccgcgcgttctccgtggcggaccagcgttcc
ctccccggcgatgtgccgcgcgtcgacctcccgcccagccgcgagctcctgctcaccgcc
gaggtgcgggagcgcgccagggcgctcatcggtggcttcccggccatcagcggcatgctc
gagaagatggccgagggcatcccggtcgagggcatggagtcgctgctgcccgcggtcgcc
ggccccctcaagtcgctcgtcgagtacctgcccgagggcacggcgaccgccgtgatcgac
ccggagcgctcgaccgcccgcgccctcaccctcggcgagacgaaccgcgagttcctcgac
gccgcctggagcgcggcgacctccggtgcctccgcccccatcgatctcggcgccggcgac
ttcctcaccatcgccgacctgcgcgaggtcgtccgcgaccggggcggcgtgtggtggcgg
ctgagcccattcgggatcggcgatgcgaccgcggagagcgtcgaggcggccaccgtcatc
ccctccttccacggcaacgtcgacggcgccatcgccttcgtcgacgcgaaggtcgccgac
ggctggcgcgtggtcgtgctcgcgaccggacacggcctcgtcgaccgcgcccgcgacgtg
ctgtccgaccgcggcatcgcggcgcgggtcgtcgagaccatcgcggacgcgccggacccg
ggggtcgcgaccctcaccgtcggcggcgtcgaagccggcttccaggtgccggaggcgaag
ctcgccgtcctcaccgacaacgagttctacggccgcaccatcggcggcgaccagcgcgtc
gtcaagaagctcgcctcccgtcggaagaacgtcgtcgatccgctgcagctcaagcagggc
gacttcgtcgtgcatgccacgcacggcatcggccgcttcgtcgagatgacccagcgcgag
gtctccaccgggggccgcaacgccgcgaagtccgtccgcgactacctcgtgctggagtat
gcgccgtcgaagcgcggctaccccggcgacaagctgttcgtccccaccgaccagctcgac
ctcctgtcgaagtacgtcggcggcgaggccccgacgctgtcgaagatgggcggcagcgat
tgggcgcaggccaagggcaaggcgcgcaaggcggtccgcgacatcgccgtcgagctcgtc
aagctctactccgcccggatgagcgccaaggggtacgccttcggcccggacaccccctgg
cagcgcgagctggaggaggcgttcccgttcgcggagacccaggaccagctgcagaccatc
gacgagatcaaggccgacatggagcggcccatcccgatggaccggctgctctcgggcgat
gtcggcttcggcaagaccgaggtcgccgtccgtgcggcgttcaaggccatccaggacggc
aagcaggtggcgatgctcgtcccgacgaccctgctcgtcaagcagcacctcgagacgttc
acggagcgcttcgccgggttcccggtcaaggtgcggccgctgtcgcggttccagaccgac
aaggaggcgcggctcacgctgcagggcctcctcgacggctcggtggacatggtgatcggc
acgcaccgcatcctcaccgagcaggtgctgttcaaggatctcggcctcatgatcatcgac
gaggagcagcgcttcggcgtcgagcacaaggacgcgctgaagaagatgaagaccaacgtc
gacatcctcgcgatgagcgccaccccgatcccgcgcacgctggagatggcggtcaccggc
atccgcgagatgtcgacgctcgccacacccccggaggaccggcacccgatcctctcgttc
gtcggaccccgcagcgacaagcagatcgccgccgccatccgccgcgagatcctccgcgag
gggcaggtcttcttcgtgcacaaccgcgtgcagtcgatccagcgggtcgcggccgagctc
gccgagctggtcccggaggcgcggatcgccgtggcacacgggcagatgggggagcacgcg
ctggagcaggtcgtcgacgacttctgggagcgcaagttcgacgtcctcgtctcgaccacg
atcatcgagaccggcctcgacatctccaacgcgaacacgatcatcatcgaccgcgccgac
aagtacgggctgagccagctccaccagctccgcggacgcgtgggtcgcggacgggagcgc
gcctacgcgtacttcctttacgacgacatgaagccgctgagcgagaccgcggccgaccgg
ctgcagaccatcgcggtcaacaacgacctcggctccggaatgcaggtcgccctgaaggac
ctcgagctgcgcggtgccggaaacctcctcggcgcggagcaggccggacacatcgcgggg
gtcggcttcgacctgtatctgcgcatgatcggcgaggccgtcgcgaccttccgcggcgag
gaggtcgagaccgggcaggagctccgcctcgagctgccgctcgacgcccgcatccccgag
gactacatcgacagcgaacgcctccggctcgaggcgtaccagaagctctccgccgcctcg
gccgcgaccgcgaaggacgacgccatcgacctcgtggtggaggagctcgtcgaccggtac
ggcacgccgccggaggaggtcaccggactcgtgtcgatcgcacggctgcggcgccgggcg
gccagggccgggctcaccgacgtcgtggccatgggctcgaacctgcgcctcgcgcccgcc
cgcctcgaggactccatcaaggtccggttgcagcggctgtatccgaaggcgaagctcgtc
tccggcggggaggccctggtcgtgccgatgcccacggtgcccgcggcggtcggcgtgggc
gtggagccgctgcccgacgccgagctgctcgcctgggtcgaccagctgttcaccgccatc
ttccccgagcccgccaagcccgagtga
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