KEGG   Methylocystis parvus: F7D14_13840
Entry
F7D14_13840       CDS       T06304                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mpar  Methylocystis parvus
Pathway
mpar03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mpar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F7D14_13840 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpar03400]
    F7D14_13840 (ligD)
Enzymes [BR:mpar01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F7D14_13840 (ligD)
DNA repair and recombination proteins [BR:mpar03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F7D14_13840 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QGM98450
UniProt: A0A6B8MCS7
LinkDB
Position
2923000..2925447
AA seq 815 aa
MPTRARKDDGALAVYRAKRDFAVTPEPQGGVPRKAAHRLVVQRHFARREHFDLRLEMDGV
LKSWAVTRGPSSNPADRRLAVRTEDHPLDYGDFEGLIPKGEYGGGTVMLWEDATFTSQNG
DPLRALEKGEIKFLAQGERMKGGYVLVRMKTRDKHENWLLIKERDAWADADADLVKRFDA
SVATGRTREEIERGAKATRRKAPAARARAAYWSDKSIASAPTPKFVAPQLCETAETAPFG
ADWLFELKYDGYRLQIATGADGAVVYTRAGLDWTARFPGLARAAFALPCRNALIDGEAVV
FDEKGLSDFAMLVSALEAGRSEAVAFVAFDLLVLDETDLRREPLRRRKALLKKLLANSGG
VLLYGDFIEGEGAAVFRRATQAGAEGIIAKRADRPYRSGRFSDWLKIKGDFREDVLIVGF
RPSEKSESFASLIAAKETLEGLRYVGRIGTGYDARARETLEPLLKKRAGAAPQLLAADKI
PKGSVLIEAPFPAEVRFGGWTMDGQLRQARFLGVREDMKAKPAPSAPEAPKLSRITHASR
VVFPSDNVTKGDIAQYYDAIAPRMIPHFADRPVSLLRAPENIGELFFQRHPLKGMNKGIL
TTPDHDELYMALDGAIGLHTAAQFGAIEIHGWMSLASDLERPDRMVFDLDPDEDLPFREV
CKAAGEIRDHLSAIGLQSWPLITGGKGVHIVLPLDRSLTYADTEVFAAGFARGLARQEPN
RFVANMSKRRRVGRIFIDWLRNKRTATAILPWSLRARPGATVATPLSWKTLGDVDRAAAF
NIRNAAKVEDGWGDFFTLRQTIAPAAIAFMRENAL
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgccgacgcgcgcgaggaaggacgacggcgcgctcgccgtctatcgcgccaaacgcgat
ttcgccgtcacgccggaaccgcaaggcggcgttccgcgtaaggcggcgcaccgcctcgtg
gtgcaacggcatttcgcgcggcgggaacatttcgacctgcgtctcgaaatggacggcgtg
ctcaagagttgggccgttacgcgcgggccctcgtcaaatccggccgaccgccgccttgcg
gtccgcacggaagaccatcctctcgattacggcgatttcgaagggctgatccccaaaggc
gaatatggcggcggaaccgttatgctgtgggaggacgcgactttcacgtcgcaaaacggc
gatccgctgcgggcgctggagaaaggggagatcaagtttctggcgcaaggcgaacgcatg
aagggcggatacgtcctcgtgcgtatgaagacgcgggacaagcatgagaactggctgctc
ataaaggagcgcgacgcctgggccgatgcggatgctgatctcgtcaaacgtttcgatgcg
agcgtcgcgaccgggcgcacgcgtgaagagatcgaacgcggcgcgaaggcgacgcgccgt
aaggcgcccgccgcgcgcgccagggcggcctattggtccgacaagtccatcgccagcgcg
ccgacgccgaaatttgttgcgccgcagctctgcgagacggccgagaccgcgccctttggc
gccgattggctcttcgagctgaaatatgacggctaccgtttgcagattgcgaccggcgcg
gacggcgccgtcgtctacacgcgcgcgggcctcgattggacagcccgcttccccggcctc
gcgcgcgccgccttcgctctgccatgccgaaacgcgctcattgacggcgaagcggtggtt
ttcgatgaaaagggcttgtcggatttcgcaatgctggtttcagcgctggaagcgggccgc
agcgaagccgtggcgttcgtcgctttcgaccttctcgtgctcgacgaaaccgatttgcgc
cgcgagcccttgcgccggcgcaaggcgctgctgaagaagctgctcgccaatagcggcggc
gtccttctttacggcgattttatcgaaggcgagggcgcggctgtttttcgccgtgcgacg
caggcgggcgccgaggggatcatcgcgaagcgcgcggaccggccctatcgtagcgggcgc
ttttcggattggctgaagatcaagggcgactttcgagaggatgtgctgatcgtcggtttc
cggccttcggaaaaaagcgaatcctttgcttcgctcatcgccgctaaagagacgctggaa
ggcttgcgctatgtcgggcgcatcggaacgggctatgacgcgcgcgcccgcgaaacgctc
gaacccctcctgaagaagcgcgcgggcgccgcgccccaactgctcgccgccgacaagatc
ccgaagggctccgtgctgatagaggcgccctttccggcggaggtgcgctttggcggctgg
accatggacggacagctccggcaggcgcgttttctcggcgtgagagaggacatgaaggcg
aaacccgcaccatcggcgccggaagcgcccaagctgtcgcgcatcacccatgcaagccgg
gtggtctttccgtccgacaacgtcaccaaaggcgatattgcgcaatattacgacgcaatc
gcgccgcgcatgatcccccatttcgcggaccggccggtcagcctcttgcgcgcgccggag
aatatcggcgagcttttctttcaacgccatccgctgaagggcatgaacaagggcattttg
acgacgccggaccacgacgaactttatatggcgctcgacggcgcgattggcctgcacacg
gcggcgcaattcggcgcgatcgaaatccatggctggatgtcgctcgcaagcgatctcgag
cggccggaccggatggtcttcgatctcgatccggacgaagatcttcctttcagggaggtt
tgcaaggccgcgggggaaattcgcgaccatctctcggcgatcggtctgcaatcctggccg
ctgatcaccggcggcaagggagttcatatcgtgctgccgctcgatcgttcattgacctat
gccgataccgaagtcttcgcggccggcttcgcgcgcggccttgcgcggcaggagccgaat
cgcttcgtcgccaatatgagcaagcggcgccgcgtgggccgcatcttcatcgactggctg
cgcaacaagagaacggcgaccgcgatcctcccctggtcgctgcgcgcgcggcccggcgcg
acggtggcgacgcctttgtcatggaagactttgggcgacgtcgatcgcgccgccgctttc
aacatccgcaacgcagccaaggtcgaagacggctggggcgattttttcactttacgccag
acaatcgctccggccgccatcgctttcatgcgcgagaatgcgctttag

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