Methylocystis parvus: F7D14_13840
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Entry
F7D14_13840 CDS
T06304
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpar
Methylocystis parvus
Pathway
mpar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F7D14_13840 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpar03400
]
F7D14_13840 (ligD)
Enzymes [BR:
mpar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F7D14_13840 (ligD)
DNA repair and recombination proteins [BR:
mpar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F7D14_13840 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGM98450
UniProt:
A0A6B8MCS7
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All DBs
Position
2923000..2925447
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AA seq
815 aa
AA seq
DB search
MPTRARKDDGALAVYRAKRDFAVTPEPQGGVPRKAAHRLVVQRHFARREHFDLRLEMDGV
LKSWAVTRGPSSNPADRRLAVRTEDHPLDYGDFEGLIPKGEYGGGTVMLWEDATFTSQNG
DPLRALEKGEIKFLAQGERMKGGYVLVRMKTRDKHENWLLIKERDAWADADADLVKRFDA
SVATGRTREEIERGAKATRRKAPAARARAAYWSDKSIASAPTPKFVAPQLCETAETAPFG
ADWLFELKYDGYRLQIATGADGAVVYTRAGLDWTARFPGLARAAFALPCRNALIDGEAVV
FDEKGLSDFAMLVSALEAGRSEAVAFVAFDLLVLDETDLRREPLRRRKALLKKLLANSGG
VLLYGDFIEGEGAAVFRRATQAGAEGIIAKRADRPYRSGRFSDWLKIKGDFREDVLIVGF
RPSEKSESFASLIAAKETLEGLRYVGRIGTGYDARARETLEPLLKKRAGAAPQLLAADKI
PKGSVLIEAPFPAEVRFGGWTMDGQLRQARFLGVREDMKAKPAPSAPEAPKLSRITHASR
VVFPSDNVTKGDIAQYYDAIAPRMIPHFADRPVSLLRAPENIGELFFQRHPLKGMNKGIL
TTPDHDELYMALDGAIGLHTAAQFGAIEIHGWMSLASDLERPDRMVFDLDPDEDLPFREV
CKAAGEIRDHLSAIGLQSWPLITGGKGVHIVLPLDRSLTYADTEVFAAGFARGLARQEPN
RFVANMSKRRRVGRIFIDWLRNKRTATAILPWSLRARPGATVATPLSWKTLGDVDRAAAF
NIRNAAKVEDGWGDFFTLRQTIAPAAIAFMRENAL
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcgcgcgaggaaggacgacggcgcgctcgccgtctatcgcgccaaacgcgat
ttcgccgtcacgccggaaccgcaaggcggcgttccgcgtaaggcggcgcaccgcctcgtg
gtgcaacggcatttcgcgcggcgggaacatttcgacctgcgtctcgaaatggacggcgtg
ctcaagagttgggccgttacgcgcgggccctcgtcaaatccggccgaccgccgccttgcg
gtccgcacggaagaccatcctctcgattacggcgatttcgaagggctgatccccaaaggc
gaatatggcggcggaaccgttatgctgtgggaggacgcgactttcacgtcgcaaaacggc
gatccgctgcgggcgctggagaaaggggagatcaagtttctggcgcaaggcgaacgcatg
aagggcggatacgtcctcgtgcgtatgaagacgcgggacaagcatgagaactggctgctc
ataaaggagcgcgacgcctgggccgatgcggatgctgatctcgtcaaacgtttcgatgcg
agcgtcgcgaccgggcgcacgcgtgaagagatcgaacgcggcgcgaaggcgacgcgccgt
aaggcgcccgccgcgcgcgccagggcggcctattggtccgacaagtccatcgccagcgcg
ccgacgccgaaatttgttgcgccgcagctctgcgagacggccgagaccgcgccctttggc
gccgattggctcttcgagctgaaatatgacggctaccgtttgcagattgcgaccggcgcg
gacggcgccgtcgtctacacgcgcgcgggcctcgattggacagcccgcttccccggcctc
gcgcgcgccgccttcgctctgccatgccgaaacgcgctcattgacggcgaagcggtggtt
ttcgatgaaaagggcttgtcggatttcgcaatgctggtttcagcgctggaagcgggccgc
agcgaagccgtggcgttcgtcgctttcgaccttctcgtgctcgacgaaaccgatttgcgc
cgcgagcccttgcgccggcgcaaggcgctgctgaagaagctgctcgccaatagcggcggc
gtccttctttacggcgattttatcgaaggcgagggcgcggctgtttttcgccgtgcgacg
caggcgggcgccgaggggatcatcgcgaagcgcgcggaccggccctatcgtagcgggcgc
ttttcggattggctgaagatcaagggcgactttcgagaggatgtgctgatcgtcggtttc
cggccttcggaaaaaagcgaatcctttgcttcgctcatcgccgctaaagagacgctggaa
ggcttgcgctatgtcgggcgcatcggaacgggctatgacgcgcgcgcccgcgaaacgctc
gaacccctcctgaagaagcgcgcgggcgccgcgccccaactgctcgccgccgacaagatc
ccgaagggctccgtgctgatagaggcgccctttccggcggaggtgcgctttggcggctgg
accatggacggacagctccggcaggcgcgttttctcggcgtgagagaggacatgaaggcg
aaacccgcaccatcggcgccggaagcgcccaagctgtcgcgcatcacccatgcaagccgg
gtggtctttccgtccgacaacgtcaccaaaggcgatattgcgcaatattacgacgcaatc
gcgccgcgcatgatcccccatttcgcggaccggccggtcagcctcttgcgcgcgccggag
aatatcggcgagcttttctttcaacgccatccgctgaagggcatgaacaagggcattttg
acgacgccggaccacgacgaactttatatggcgctcgacggcgcgattggcctgcacacg
gcggcgcaattcggcgcgatcgaaatccatggctggatgtcgctcgcaagcgatctcgag
cggccggaccggatggtcttcgatctcgatccggacgaagatcttcctttcagggaggtt
tgcaaggccgcgggggaaattcgcgaccatctctcggcgatcggtctgcaatcctggccg
ctgatcaccggcggcaagggagttcatatcgtgctgccgctcgatcgttcattgacctat
gccgataccgaagtcttcgcggccggcttcgcgcgcggccttgcgcggcaggagccgaat
cgcttcgtcgccaatatgagcaagcggcgccgcgtgggccgcatcttcatcgactggctg
cgcaacaagagaacggcgaccgcgatcctcccctggtcgctgcgcgcgcggcccggcgcg
acggtggcgacgcctttgtcatggaagactttgggcgacgtcgatcgcgccgccgctttc
aacatccgcaacgcagccaaggtcgaagacggctggggcgattttttcactttacgccag
acaatcgctccggccgccatcgctttcatgcgcgagaatgcgctttag
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