Methyloradius palustris: ZMTM_11010
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Entry
ZMTM_11010 CDS
T07445
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpau
Methyloradius palustris
Pathway
mpau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ZMTM_11010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpau03400
]
ZMTM_11010 (mfd)
Enzymes [BR:
mpau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ZMTM_11010 (mfd)
DNA repair and recombination proteins [BR:
mpau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ZMTM_11010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
HemY_N
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCM24842
UniProt:
A0A8D5FZ88
LinkDB
All DBs
Position
complement(1175970..1179419)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPHPAPGQSERVAPMPAGYDSLLLAQHAQSLKKHQAETKSNKSSKLKPLVIITASAFDAQ
RLVEELPFFAPDLVVSMLPDWETLPYDHFSPHPDLISERLATLYQISQNLCDVIIVPAGT
ALLRLPSQAYLAANTFMLKKGQRLDLDALRKQCAEAGYHHVSQVMSPGEFSVRGGLVDLF
PMGSALPYRLDLFDDEIETIRTFDIDTQRSLYPVAEIRLLPAREFPLDEAGIARFRQNFR
ETFEGDPSRSRIYKDVSKGIASGGIEWYLPLFFEQTATLLDYLPENATLCMHGNLDLAAQ
GFWREAQSRYRLLAHDVERPILKPETLLIKADDFFTLTHQYARLIITTESTENGLPALDI
ERRAEQPLHKLQSFIKQFPGRILIAAESLGRRETMLQLLHDQGITPTLCETWDAFFNSDE
KLILGVSPLHAGFIHPHSPDHNQQSFAIITEAELYAATVRQQRRREKEKARNTEGMLKDL
SELRENDPVVHEQHGVGRYRGLVNLDFGEGETEFLLLEYAGDDKLYVPVSQLFLISRYSG
GPPESAPLHRLGSGNWEKAKKKALKQIRDTAAELLNLYAQRAARRGHAFKLSLHDYETFA
EGFPFEETPDQLSAIEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVSV
LVPTTLLAEQHFQNFSDRFAEWPIKIAEISRFRSAKEQTEALKGLADGKIDIIIGTHRLI
QKDVHFKNLGLVILDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFS
VITTPPQKRLAIKTFHTDYSEGIIHEAVMREFKRGGQVYFLHNEVDTIHSMREKLERIVP
EARIAIAHGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANTIIMNRADMFGLA
QLHQLRGRVGRSHHQAYAYLLTDPNRNITPQAKKRLDAIQLLEDLGAGFHLAMHDLEIRG
AGELLGDSQSGEMQEIGFHLYSEMLAHAVKQLKAGKEPDISAPLGITTEINLHTPALLTN
DYCPDVHERLVLYKRLANCTNDDELDNMQEELIDRFGLLPEQGEALMACHRLRVSAKPLG
ITKIDASDSAIQLQFSQQTELDPTKLIALLQRDRRCRMNGPDKLRVTLQLADINDRASFI
KGLLKELAS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttgcctcaccctgcccctggtcaatctgaacgtgtcgctcctatgccagctgggtacgat
agcttgctacttgcacaacatgcacagagcctcaaaaaacaccaggcagagaccaagtca
aataagtccagcaagctaaaaccgctggtgatcataaccgccagcgcattcgatgcgcag
cgtttagttgaggagctgccgttctttgcgcctgatttggtggttagcatgctgcctgat
tgggagacattaccttacgaccatttctcgccgcatcctgacctcatctccgagcgcctc
gccacgctttaccagatcagccaaaacctttgtgacgtcattattgtgccagctggcaca
gccttgctgaggctgccatcacaagcgtacctggcagccaacaccttcatgctgaaaaaa
gggcaaaggctggatctggatgctttgcgtaaacagtgtgcagaagctggctaccaccat
gtgagccaggtgatgagcccaggtgaattcagcgtgcgtggcggtttggttgacttgttt
cccatgggcagtgcactgccttaccgtttggatttattcgatgatgaaatcgagacgata
cgtacttttgatattgatacgcagcgcagcctttatccagtggctgaaatccgcttgtta
cctgcacgtgaatttccactggatgaggcaggtatcgcccgcttccgccagaatttccgc
gagacgtttgaaggcgatccatcgcgtagccgcatctataaagatgtcagcaaaggtatc
gccagcggcggcatagaatggtatctgccgctgttctttgagcaaacagcaaccctgctg
gattatctgcctgagaacgccactctttgcatgcatggcaatcttgaccttgctgcgcaa
ggtttctggcgcgaggcacaatcacgttatcgcttgctggcgcatgatgtagaacgcccg
attctcaaaccagaaactttgctaattaaagccgatgatttctttacgctcacgcaccaa
tacgcacgactaatcataactactgagagtactgaaaatggcctgccagcgttagatata
gagcgccgcgctgagcagccattgcataagttgcagagctttatcaaacaatttccaggg
cgaatacttatagcggctgaaagcctgggccgccgtgaaaccatgctgcaactgctgcat
gatcaaggcatcacgccaacactatgtgaaacctgggatgcattcttcaacagcgatgaa
aaactgatactgggcgtttcgccattacatgcgggcttcattcaccctcactcgccagac
cacaatcaacagtcctttgccatcatcactgaggctgagttgtatgccgccaccgtgcgc
caacaacgtcggcgagagaaagaaaaggcgcgcaatacagaaggcatgctcaaggattta
tccgagctacgcgagaatgaccccgtggtgcacgagcagcatggtgtaggccgctatcgc
ggtttggtgaacctggattttggcgaaggcgaaaccgagttcctgctgctagaatatgct
ggtgatgataagttgtatgttccagtttcacagttattcctgatttcacgctactcaggc
ggcccgccagaatcagcgccattacacagactgggctcaggcaactgggaaaaagcgaag
aaaaaagcgcttaaacaaatacgtgacaccgcagcagaattgctcaacctctatgcgcag
cgtgcagcacgtcgtggccatgcgttcaagctaagcctgcatgattatgaaaccttcgcc
gaaggattcccatttgaagaaacgccagaccagctatcggccattgaagccgtcatcagc
gatatgcagtctggcagaccgatggatagactggtatgcggcgatgtaggcttcggcaag
actgaagtcgcattacgtgccgcttttgttgcggtgatgggcggcagacaggtttcagta
ctggtgccgacgacactgctggcagaacagcacttccagaacttctctgatcgctttgcc
gaatggccgatcaagattgctgaaatctcgcgtttcaggtctgcaaaagagcaaaccgaa
gcactcaaaggattggccgatggcaagatcgatatcattatcggtacgcacagattgatc
cagaaggatgtgcatttcaagaatcttggcctagtcatactcgatgaagaacaccgtttt
ggtgtacgccaaaaagaacaactgaaagccatgcgcgccgaggtggatgtattgacgctt
accgccacaccaatcccacgtacgctatcaatggcgatggaaggcctgcgcgaattttcg
gtaatcactacaccgccgcagaagcgactggcgatcaaaactttccatactgattattct
gaaggcatcatccacgaagctgtgatgcgtgaattcaagcgtggcggccaggtttatttc
ctgcataacgaagtcgataccatccactctatgcgtgaaaagcttgagcgcattgttcca
gaagcccgcatcgccattgcccacggccagctcagggaacgcgagctggagcatgtgatg
cgtgatttctaccagcagcgtttcaacctgctgctgtgcaccaccattattgaaacaggc
atcgacgtgcccacagccaacactatcatcatgaaccgcgccgatatgttcggcctcgct
cagctacaccaattgcgtggccgtgtcggacggtcacatcaccaagcctatgcctattta
ttgactgacccgaatcgcaatattacaccgcaagccaaaaaacgcctggatgccattcag
ctattagaagacttgggggctggcttccacctcgcaatgcacgaccttgagattcgcggc
gcaggtgaattgttaggtgactcacaaagtggcgagatgcaggagattgggttccacctt
tattctgaaatgcttgcccatgcagtgaagcaactcaaggcaggtaaagagcctgatatt
tcagcgcccttgggcatcaccacagaaatcaatctacacacgccagcgttactgaccaac
gactactgccccgatgtgcatgaacgcctggtgctctacaaacgccttgctaactgcacc
aacgatgacgaactcgacaatatgcaagaagagctcatagaccgctttggactgctaccc
gaacaaggtgaagcgctcatggcatgtcacaggttgcgtgtatctgccaaaccactaggc
atcaccaagattgacgccagtgatagcgctatccaattacaattcagccagcaaacagag
ctggacccgaccaagctgattgcattgttgcagcgcgaccgccgttgccgcatgaatggg
cctgataagttacgtgtcaccttacagctagcggatatcaatgaccgcgcatcgtttatc
aaaggcttattgaaagagcttgcgagctaa
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