Methanocella paludicola: MCP_1743
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Entry
MCP_1743 CDS
T01142
Name
(GenBank) putative single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mpd
Methanocella paludicola
Pathway
mpd03410
Base excision repair
mpd03430
Mismatch repair
mpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MCP_1743
03430 Mismatch repair
MCP_1743
03440 Homologous recombination
MCP_1743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpd03400
]
MCP_1743
DNA repair and recombination proteins [BR:
mpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MCP_1743
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MCP_1743
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCP_1743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
CDC45
Motif
Other DBs
NCBI-ProteinID:
BAI61815
NITE:
MCP_1743
UniProt:
D1YZE3
LinkDB
All DBs
Position
1742535..1743842
Genome browser
AA seq
435 aa
AA seq
DB search
MSDMSKLDELSSLTRPAVNKIKAQQFVRVVSHHDADGITACGIICHMLQRLNIPFQATIV
SNLDHSIEKLIEPGEFVIFCDMGSGQPDIVNKYQAVILDHHMVLDGQKQIHVNPHLIGID
GGSEVSGSGVAYSLARMMGKNADLAGLAISGAIGDKQKMVSVNKDILNEGVNSGAITVQK
GLKLGKGPLEKVLSCSTDPYFDFSGRPEEAKKFIDELGLKGSIESLSPEELKRLSSALTL
KLLKKSPPDTIDSLLGDTYILNDELIKDVYDFSNTVNSCGKLGVPGLGLSVCLRYRPSVE
EAEHRRFDYSEQILKALHDAISSVQECGSLRYLDICCSDVTGAIASTIIRYVMPDKPIIV
LNTEDGNVKISARGTADLIGRGLDLSVAIRESAKQAGGSGGGHKIASGGMIPRGTEKTFL
ASADAIIGRQLNGSL
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatgtcgaagctggacgaactctcgagcctcacaaggcccgcggttaacaag
atcaaggcgcagcagttcgtccgggtcgtgtcacaccacgacgcggacggcatcactgca
tgcggcatcatctgccacatgctgcagcgccttaatattccttttcaagcgaccattgtc
agtaaccttgaccattctatcgaaaaactgatcgagcccggcgagttcgtcatcttttgc
gacatgggctccggccagccggacattgttaataagtaccaggcggtcatcctggaccac
cacatggtcctggacggtcaaaagcagatacatgtgaacccccacctcatcggcatcgac
ggaggctccgaggtatcaggctccggcgtcgcctattcgcttgcccgcatgatgggcaag
aacgccgacctggcaggcctcgccatttccggcgccatcggcgacaagcagaagatggtc
agcgtcaacaaggatattcttaatgagggcgtcaactcgggcgccattactgtccagaaa
gggctaaagctcggcaagggccccctggaaaaggtgctctcctgctccacggacccgtac
ttcgacttttccgggcgccccgaagaggcaaaaaagttcatcgatgagctcgggctcaag
ggcagcatcgaatcgctgtcccctgaagagctcaagaggctatccagcgccctgaccctg
aagctcctgaaaaagtccccgcccgacacgatcgattcgcttctgggcgacacgtacatc
cttaacgacgaattgatcaaggacgtttacgatttttctaacaccgtcaattcctgcggc
aagcttggcgtccccggcctggggctgtcagtctgcctgcgctaccggccttcggtcgag
gaggccgagcacaggcgcttcgactactctgagcagatattaaaggcgcttcacgacgcc
atatcaagcgtgcaggaatgcgggtccttaaggtatctggatatttgctgctctgacgtc
acgggcgcgatcgcatcgacgataatacggtacgtgatgccggacaagcccatcatcgtc
cttaacaccgaggacggcaacgtaaaaatttctgcccgcggcacggccgacctcatcggc
aggggcctcgacctgtccgtggcaataagagagagcgctaagcaggccggcggcagcggc
ggagggcataagatcgcctccggcggcatgatcccccgcggcaccgagaaaacgttcctg
gcctccgcggacgccattatagggaggcagttgaatggtagcttgtaa
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