Mesotoga prima: Theba_0725
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Entry
Theba_0725 CDS
T02123
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mpg
Mesotoga prima
Pathway
mpg03030
DNA replication
mpg03410
Base excision repair
mpg03420
Nucleotide excision repair
mpg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Theba_0725
03410 Base excision repair
Theba_0725
03420 Nucleotide excision repair
Theba_0725
03430 Mismatch repair
Theba_0725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpg03032
]
Theba_0725
03400 DNA repair and recombination proteins [BR:
mpg03400
]
Theba_0725
Enzymes [BR:
mpg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Theba_0725
DNA replication proteins [BR:
mpg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Theba_0725
DNA repair and recombination proteins [BR:
mpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Theba_0725
NER (nucleotide excision repair)
GGR (global genome repair) factors
Theba_0725
MMR (mismatch excision repair)
DNA ligase
Theba_0725
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Theba_0725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
HHH
DNA_ligase_ZBD
HHH_3
5_3_exonuc
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AFK06442
UniProt:
I2F3D9
LinkDB
All DBs
Position
771393..773390
Genome browser
AA seq
665 aa
AA seq
DB search
MITFEEARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPELKTPDS
PSIRVGLKPVASFKEVVHEYRLFSLDNTYSEEEVLQFDRRVREELQIEIVRYMCELKIDG
LSISVKYDNGLLVRGATRGNGFVGEDVTENIRAIKSIPLRLRQDLSVEVRGEVYLPKDVF
YEINRARSKGELQVFANPRNAAAGTLRQLDPREVAKRRLNAFFYHVVEPSKLQLKSQNEQ
LQFLKSIGMRVEPNSELAEGTDGVIAFWKKWSESKSSLNYAVDGTVVKVDDLYAQEELGY
TTKAPRWAIAFKFPAEQAMTKLIKVTFGVGRTGTITPVAELEPVQLAGTTVKRASMHNFD
FISEKDIRLFDIVIVQKAGEIIPQIVRSIPEKRTGKEKRITPPSRCPVCGGEVGREKEED
VALKCLNPTCPAKLSRRIQFFCSRDAMDIEGLGEKLVERIVEAGLVKNPSDLYKLNKDDL
LSLGEGIGEKTASNLIEAIQKSRSNPLFKLITGLGIPGVGSKTSKDLANYFGSLRGLVSA
DEKELRNVSGIGEQLAKDIKRYFSSPEVKKEVEELLKYVNIKDEDSPGSKPLKGMKFVVT
GTLPGYSRKEIQEKIIKLGGEVASSVSKNTDFLLLGENPGSKEQKARDLGIKIIDERDFE
EMIKS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgataacgtttgaagaagctagaaagcgaatcgacgagttgagaaaggaaatagattat
catgcttacaggtattacgttttggacgatcccgaaatccctgattccgaatacgataac
cttcttagaacactcattgatcttgaagagcagtaccctgagcttaaaacgcctgattcg
ccaagcattagagttggtttgaaacccgttgcttctttcaaggaagtagttcatgaatat
agactgttttctctcgataacacatactcggaagaggaagtgcttcagtttgacagaaga
gtaagggaagagctccaaatcgagatagtacgctatatgtgcgagttgaagatcgacggc
ctttcaatctcagtgaagtacgataatggccttcttgtaagaggtgctacaagaggaaat
ggcttcgtcggagaggatgtcaccgagaatatcagggctattaaatctattcccttgcgt
ctcaggcaagatctttcagttgaagtgaggggtgaagtctatcttccaaaggatgtattt
tacgagatcaacagagctcgttcgaaaggtgaacttcaggtctttgccaatcctcggaat
gcggcggctggaactctgagacaactcgatcccagagaggtcgcgaagagacgattaaat
gccttcttttatcatgtcgttgagccatcaaagcttcaactgaaaagtcagaacgaacag
ctccaattcttgaagagtatcggcatgagagttgagccaaacagtgaattagctgaaggt
acagatggtgtgatagcgttttggaagaaatggtcggagtcgaaatctagtctcaattac
gcagtagacggcacggtagtaaaagttgacgatctctatgctcaggaggaattaggatac
acgacaaaagcacctagatgggctatagcgttcaaattccctgccgagcaggctatgaca
aagttgatcaaggttaccttcggagttggcaggactggaacgataacaccggttgctgag
ctcgaaccagttcaacttgcaggtactactgtaaagagagcaagcatgcacaacttcgat
tttattagtgagaaggacataagactctttgacatagtaatagtccaaaaagctggagag
atcatcccgcaaatcgttagaagtattccggaaaagaggacgggtaaagaaaaaaggata
accccgccttctagatgtcctgtttgtggcggagaagtggggagagagaaagaagaggat
gttgctttgaagtgcctgaatcccacctgcccagcgaaattaagcagaagaatacagttc
ttctgttccagggatgcgatggatatcgagggactgggcgagaaactggtcgagcgaatt
gttgaggcgggccttgtgaaaaacccatcggatctctataagcttaacaaggatgatctt
cttagtctaggagagggcattggtgagaagacggcaagcaatctgattgaagccatccag
aagagcaggagcaatcccctcttcaagctgataaccggcctgggtattccaggagtggga
tcaaagacatcaaaagatcttgcgaactactttggcagtcttcgtggacttgtctctgca
gacgaaaaggaactgcgaaacgtttcaggcatcggtgagcagctggccaaagatatcaaa
aggtacttctcttctccggaagtcaaaaaagaggtcgaggagctattgaaatacgttaac
attaaggacgaagattcacctgggtcaaaaccgttgaagggaatgaagtttgtggttacg
ggaacgcttccgggatactctagaaaggaaatacaggagaagattatcaaacttggtgga
gaagttgcttcgtcggtctcaaagaataccgatttcttgctcttgggtgaaaatcccggt
tcaaaagaacagaaggcgcgcgacctcggaatcaagatcattgatgaaagagatttcgag
gagatgataaaatcctaa
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integrated database retrieval system
