Monomorium pharaonis (pharaoh ant): 105837014
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Entry
105837014 CDS
T05760
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03022
Basal transcription factors
mpha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105837014
09124 Replication and repair
03420 Nucleotide excision repair
105837014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpha03021
]
105837014
03400 DNA repair and recombination proteins [BR:
mpha03400
]
105837014
Transcription machinery [BR:
mpha03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105837014
DNA repair and recombination proteins [BR:
mpha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105837014
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
105837014
NCBI-ProteinID:
XP_012536915
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MSNATIGGKNLLRSTGLQCKNLHEYLKSRTPETLNKLYHKPPICLAVFRELPVIAKHYVM
RLLFVEQPVPQAVIASWCSKLYFEEHQRVVQILNELYVWKEASIPGGLPGWLLNNTFKKN
LKIVLLGGGKPWTMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVR
ILLHAGLMKRDEADGSPVITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVECLTFL
FQLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGETKP
LTRDTDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALK
SGITASQIVGYLQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRFSFSEGVLYSQFLSQ
TDFEVLRDHAVSTGVLIWQNERKRTMVVTKTGHDDVKKFWKRYSKGSS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgcgacaataggcggcaagaacttgctgcggtcgaccggcctgcagtgcaag
aacctgcacgaatacttgaagtcccgcaccccggagactctaaacaagctctaccacaag
ccgcctatatgcctggccgtgttccgcgaactgcctgtcatcgccaagcactacgtgatg
aggctgctgtttgtcgagcagccggtgccacaggcggtcatagcgtcctggtgctccaag
ctctatttcgaggagcaccagagggtagtgcagattctaaacgagctttacgtgtggaag
gaggcgtcgatacccggtgggttgccaggctggctcctaaacaacaccttcaagaagaac
ctcaagatagtgctactgggtggtgggaaaccgtggactatgtccaatcagttggagact
gacagtaaaccgcgagatgtagcctttctggattcatatgcactggagaggtgggagtgc
gtcctacactacatggttggttcccagcagcaggagggcatatcagctgatgctgtaaga
attcttctacatgctggtttaatgaagagagatgaggctgatggaagcccagttataacg
caagctggctttcagtttttgcttttagacacagcttcgcaggtatggtattttattcta
cagtatctcgatacaattgaggcacgtggtcttgacttagtagagtgccttactttcctg
tttcaactaaacttttccaccctcggtaaagattacagtaccgaaggcatgtccgaaggg
cttttaacctttttacaacatttaagagaatttggacttgtatatcaacgaaaacgtaaa
gcaggaaggttttatccaactcgattagcgttaaacatcgctacaggtgaaactaaacct
ttgaccagggatacagacaaggaagggtatatagttgtggaaacaaattatcgagtttac
gcctatacaaattcgaacttgcaagttgcattgcttggacttttctgcgaaatgttatat
agatttccaaatttagttgtatcaatattaacaagagattctgtgagacaagcattgaag
agtggaataactgcttctcagatagtaggctatttacagcaacatgcacacagtaagatg
atagaagcaggtccacctatactgccacctactatagtagatcaaattaaattatgggaa
aatgaaagaaatcgattttcattcagcgaaggagttctatacagtcaatttctttcgcaa
actgattttgaagtccttagggatcatgcagtttcaaccggtgtattaatttggcaaaat
gaaagaaaaagaaccatggtagtcaccaaaactggacatgatgatgtaaaaaagttttgg
aaacggtactcaaaaggctcaagttaa
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