Mycolicibacterium phocaicum: MPHO_28350
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Entry
MPHO_28350 CDS
T07283
Symbol
ligD_1
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mphu
Mycolicibacterium phocaicum
Pathway
mphu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mphu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MPHO_28350 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mphu03400
]
MPHO_28350 (ligD_1)
Enzymes [BR:
mphu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MPHO_28350 (ligD_1)
DNA repair and recombination proteins [BR:
mphu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MPHO_28350 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBZ55843
UniProt:
A0A7I7ZRH4
LinkDB
All DBs
Position
complement(2936457..2938673)
Genome browser
AA seq
738 aa
AA seq
DB search
MEQFGRVRLTNPDKVLYPATGTTKADVFDYYLAVADAMLPHIAGRPVTRKRWPNGVAQQP
FFEKQLASSAPEWLARGAITHRSGTTVYPVIDTPEGLAWIAQQASLEVHVPQWRFVDATV
GPATRIVFDLDPGEGVVMAQLCEVAQAVRELVAGMDLEAYPVTSGSKGLHLYVPLTSPVS
SRGASAVAKRVAQQLESSMGGLVTATMTRSLRAGKVFLDWSQNSAAKTTVAPYSLRGRDE
PTVAAPRTWEELDDPELRQLRFDEVLARLARDGDLLAGMDVDAPVADRLTTYRSMRDPGR
TPEPVPAAQPASGQNNRFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTSTVNHLAV
HTEDHPLEYATFEGDIPKGEYGGGHVAIWDSGTYDTEKFRDSGENGEVIVNLHGNRVSGR
YVLIQTEGKNWLVRRMKEQRLQPMLATHGSVDRLSADHWAFEGKWDGYRLLVDADHGRIR
LTARSGRDVTGEYPQLQSLAADLADHHVILDGEVVALQDGVPSFQAMQNRGSGSHIEFWC
FDILSLDGRDLTRAKYRDRRKLLETLASGGALTVPPLLPADDPLKFADERGFEGVVAKKW
DSGYRPGRSEAWVKDKFWRTQEVVIGGWRAGEGGRTSGIGALLIGVPEGDGLQFVGRVGT
GFTDKMLADLKAMLKPLETSESPFTAPLSTLDGRGVTFVRPELVGEVRYSERTTDNRLRQ
PSWRGLRPDKTPAEVTWE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggagcaattcggacgggtgcggctgacaaaccccgacaaggtgctctatccggcgacg
ggcacgaccaaggccgacgttttcgactattacctggccgttgccgacgccatgttgccg
cacatcgcgggccgtcccgtgacccgcaaacgctggcccaatggtgttgcgcagcagccg
ttcttcgagaagcagctcgcgtcgtcggcgccggagtggctggcgcggggcgcgatcacg
catcgcagcgggaccaccgtctacccggtcattgacacccccgaggggctggcctggatc
gcccagcaggcgtccttggaagtgcatgtgccgcaatggcgctttgttgacgcgacggtg
ggccccgccacccgcatcgtgttcgacctcgacccgggcgagggtgtcgtcatggcccag
ctgtgcgaggtggcgcaggccgtccgtgaactcgtcgccggtatggatctcgaggcctat
ccggtgaccagcggcagcaagggtttgcacctctatgtgccgctgacctcgcccgtcagt
tcccgtggtgcgtcggccgtcgccaaacgtgttgcccagcaactcgaatcctcgatgggt
gggctggtcaccgcgaccatgacccgcagtctgcgggccggcaaggtgttcctggactgg
agccagaactccgcggccaagacgacggtcgcgccgtactcgttacgcggccgcgacgaa
ccgaccgtcgccgcgccgcgcacctgggaggaactcgacgatccggagttgcgccagctg
cggttcgacgaggtgctggcccgcttggctcgcgacggcgatctgctcgcgggcatggat
gtcgacgcgccggtggccgatcggctcaccacctaccgcagtatgcgggacccgggccgg
accccggaaccggtgccggcggcccagcctgcgtcggggcagaacaatcgcttcgtcatt
caagagcatcacgcccgccggctgcactacgacttccggctggaacgcgatggtgtgctg
gtcagttgggctgtgccgaaaaaccttccggacacctcgaccgtcaaccacctggcggtg
cacaccgaagaccacccgttggaatacgccaccttcgaaggtgacatccccaagggcgaa
tacggcggcggccatgtcgcgatctgggactcgggcacctatgacaccgaaaagttccgg
gactcaggcgaaaacggtgaggtgatcgtcaacctgcacggaaaccgggtctcggggcgg
tatgtgctgatccagaccgaaggtaagaactggctggtgcgccggatgaaagagcaacgg
ctgcaacccatgctggccacgcacggatcggtggatcgactctctgcggaccactgggcg
ttcgagggaaagtgggacggctaccggctcctggtcgatgccgaccacggccgaatccgg
ctgaccgctcgcagcggccgcgacgtcaccggggagtatccgcaattgcagtcgctggca
gccgatctcgccgatcatcatgtgatcctcgacggcgaggtcgtggccctgcaggatggc
gtaccgagttttcaggccatgcagaaccgcggttccggcagtcacatcgaattctggtgc
ttcgacatcctgtcgctcgacggccgcgacctgacacgcgcgaagtatcgagatcggcga
aagttgttggaaaccctggcttctggcggtgcgctgacggtgccgccgctgttgccggcg
gacgaccccctgaagttcgcggacgagcgcggctttgaaggtgtggtggcgaagaaatgg
gattccggataccggccagggcggtcggaggcctgggtgaaggacaagttctggcgcacc
caggaagtggtgatcggcggctggcgtgccggtgaaggtggccgcaccagcggtatcggg
gcgctgctcatcggggtgcccgaaggggacggcctgcagttcgtcggccgcgtcggtacc
gggttcaccgacaagatgctggctgatctgaaggcgatgctgaaaccactggagaccagc
gaatcgccgtttaccgcaccgctttccacattggacggacgcggcgtgaccttcgtgcgg
cccgagctcgtcggcgaggtgcgctacagcgagcgcacgacggacaatcggctacggcag
cccagctggcgtggcttgcgcccggacaagacgccggccgaggtcacatgggagtga
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