Methylophaga pinxianii: LGT42_001190
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Entry
LGT42_001190 CDS
T08312
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mpin
Methylophaga pinxianii
Pathway
mpin02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LGT42_001190 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpin03021
]
LGT42_001190 (rpoD)
Transcription machinery [BR:
mpin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LGT42_001190 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GAS
Motif
Other DBs
NCBI-ProteinID:
UPH45923
LinkDB
All DBs
Position
complement(245299..247137)
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AA seq
612 aa
AA seq
DB search
MKDQQSRVKELIALGKERGYLTYGEINDHLPEDLVDADQVEDIVSMFSDLGIMVHEDGMD
TDEMERLAEAVSSNDEVSDEEAAAVLASSDGEFGRTTDPVRMYMREMGSVELLTREGEIV
IAKRIEAGLRESLLMLSTYPPVISSFLEFYDAVEAGEMRLNELIRGFVAPEELVASDDDD
EDITSTTDSDDADSDDDDDDDVGGVSDDEDDSGEIDPEEARVRFTALREAYNKVLATEGE
AMIEAREQASNLFMEFKLTPKTLLFLNDLMAETIAEVRKQEKIIMDIVVEQAGMNRRDFI
DAFQGNESNLEWSDKFVRAKKHYSSTIKKNLDDILAAQSKLAEIADDRGLNIADIKEISR
QMSIAEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVARQMLQEMGREPTPDEL
AERVEMPEDKVRKVLKISKEPISMETPIGDDEDSHLGDFVEDINVMSPADSAIIEGLREA
TQGVLNGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SDQLRSFLDSDS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcagcaatcacgcgttaaagaacttatcgcccttggaaaggagcgcggttat
ctcacttacggcgagatcaatgaccaccttccagaagatttagtcgatgcggatcaggtc
gaagatattgtcagtatgttcagcgacctgggtatcatggttcatgaagatggcatggat
accgatgagatggaacgtcttgccgaagcggtttcatccaatgacgaagtctctgatgaa
gaagccgcagctgtcctggcaagttccgatggtgagtttggtcgtacaaccgatcctgtg
cgcatgtacatgcgcgaaatgggatcagttgagctattgacccgcgaaggcgaaatagtc
attgccaaacgcattgaagctggtctgcgcgaaagcctgttaatgctgtctacttatcca
ccggtaatttcttcattccttgaattctatgatgcagttgaagcaggcgaaatgcgtctg
aatgaactgatccgtggttttgtggcacctgaagagcttgttgccagtgatgatgacgat
gaagatatcaccagcacaacggattctgatgacgctgacagcgacgatgatgacgatgat
gatgtgggtggcgtaagtgatgatgaagatgattctggtgaaattgatccagaagaagct
cgggttcgctttaccgcattacgtgaagcatacaacaaggttctagcgactgaaggcgag
gcgatgattgaagctcgtgaacaggccagtaacctgtttatggaattcaaattaactccc
aaaacattacttttcttgaacgatttgatggcagagaccatcgcggaagttcgtaaacaa
gaaaaaattattatggatatcgtggtcgagcaggcgggtatgaatcgtcgtgactttatc
gacgcgttccaaggcaatgaaagcaaccttgaatggtctgataagttcgttcgagctaaa
aaacattattcatccactatcaagaaaaatcttgatgacattttagctgcacaaagcaaa
ctggccgaaattgctgatgaccgtggtttgaacattgctgatatcaaagaaatcagccgt
caaatgtcgatcgcagaagccaaagcccgccgtgccaaaaaagaaatggtagaagctaac
ctgcgtctggttatctcaattgccaaaaaatacactaaccgtggtctgcaattcctggat
ttgattcaggaaggcaacattggtctgatgaaagcggtagataaattcgaatatcaacgt
ggttacaagttctctacctatgcaacatggtggattcgtcaggcgattactcgttctatt
gccgaccaggctcgtaccattcgtataccggtacatatgattgaaaccatcaacaaactc
aatcgtgttgcccgtcaaatgctgcaggaaatgggccgtgaaccgacacctgatgaattg
gcagaacgtgtcgaaatgccggaagacaaagtacgtaaagtactgaaaatttcgaaagaa
ccaatttccatggaaacgccaattggtgatgatgaagattcacatctgggtgatttcgtt
gaagatatcaatgtgatgtcaccagcagactcggctataattgaaggcctgagagaagcc
acccagggcgttctaaacggcctgaccgaacgagaagcaaaagtactgcgcatgcgtttt
ggtattgatatgaacaccgaccacacccttgaagaagtcggtaaacagtttgacgttacc
cgtgaacgtattcgtcagattgaagccaaagccttacgtaaactgcgtcacccatcacgc
tcggatcaactgagaagcttcctcgactcagacagctga
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