Pseudoduganella plicata: E1742_01725
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Entry
E1742_01725 CDS
T06563
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpli
Pseudoduganella plicata
Pathway
mpli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E1742_01725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpli03400
]
E1742_01725 (mfd)
Enzymes [BR:
mpli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E1742_01725 (mfd)
DNA repair and recombination proteins [BR:
mpli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E1742_01725 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF4217
SKI
AAA_30
ERCC3_RAD25_C
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QBQ35032
UniProt:
A0A4P7BAX8
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All DBs
Position
complement(405482..408919)
Genome browser
AA seq
1145 aa
AA seq
DB search
MPFDLKKALPKPGNRFVLPALYGSSDAWALAQAALELKSRGQMLAVIVAQASDGQRLLDE
IPWFAATLRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIRSGQCDVMIVPATTALVRM
APPSFLAAYTFFFKQGESLDEAALKSQLTLAGYSHVTQVMSPGEYSVRGGLIDLFPMGSA
LPYRLDLFGDTIETIRTFDADTQRSLYPVKEVRLLPGREFPMDEAARTTFRSRWRETFEG
DPSRTVVYKDISSGIASAGIEYYLPLFFDETATLFDYLPDGAALALIGDIDGAIRRFWAD
TESRYKFLKSDRERPLLPPESIFLRDEAFFTCAKQHARVAITREGDGLPSEISAPIPNVA
VNRHLDDPLINLRAYLMQPGRRVMMCADSNGRRETLQQYFGEFGLQPALVEGYQGFLASD
APFALGVAPLQQGFELSLDTPLAFLTETELYAGSGRRVGKKKQEAVTQVESMVRDLSELK
IGDPVVHINHGIGRYMGLVSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGGAPE
DAPLHALGSGQWEKAKRKAAEQVRDTAAELLNLYARRAARQGHAFEYSSHDYERFAESFG
FDETPDQAAAILNVIRDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILAPT
TLLAEQHAQTFADRFADWPVKIAEMSRFRTGKEIANAIKGMADGTLDIVIGTHKLLSEDV
KFTRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT
APQKRLAIKTFVRSEGESIIREAVLRELKRGGQVYFLHNEVETIQNRLAQLTELLPEARI
AVAHGQMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLVNDVQSLSKQAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEV
LGESQSGEMLEVGFQLYTDMLNEAVRALKAGKEPDLAAPLSTTTEINLHVPALLPADFCG
DVHERLSIYKRLANCTSQEAIDGLQEELIDRFGKLPDPAKALIETHRLRIAAKTVGIVKI
DAHGEAANLQFMPKPPIDPMRIITLIQKNRHIKLNGQDKLKITAAMPDLPARVAQIKTAI
KQLLN
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgacttaaaaaaagcccttcccaagcccggcaaccgcttcgtgctgccggcg
ttatatggttcgtccgatgcctgggccctggcccaggcggcactggaactgaagagccgc
ggccagatgctggccgtgatcgtcgcccaggccagcgacggccagcgcctgctggacgag
atcccgtggttcgccgccaccttgcgctgccacctgctgcccgactgggaaaccctgccg
tacgacgcgttttcgccgcaccaggacctggtgtccgagcgcctggccaccctgcacgag
atccgcagcggccagtgcgacgtgatgatcgtgcccgccaccacggcgctggtgcgcatg
gcgccgccgtcgttcctggcggcctacacgttctttttcaagcagggcgaatcgctggac
gaggcggcgctgaagtcgcaactgacgctggccggctacagccacgtgacgcaggtgatg
tcgccgggcgaatattccgtgcgcggcggcctgatcgacctgttcccgatggggtccgcg
ctgccgtaccgcctcgacctgttcggcgacacgatcgagacgatccgcacgttcgacgcc
gatacgcaacgctcgctgtatcccgtcaaggaagtgcggctgctccccggccgtgaattc
ccgatggacgaagccgcgcgcacgacgttccgcagccgctggcgcgaaacgttcgaaggc
gacccttcgcgcaccgtcgtctacaaggacatcagcagcggcatcgcctcggccggcatc
gaatactacctgccgctgttcttcgacgagacggccacgctgttcgactacctgcccgat
ggcgccgcactggcgctgatcggcgacatcgacggcgccatccgccgcttctgggccgac
acggaatcgcgctataaattcctcaagtccgaccgcgaacgcccgctgctgccgcccgaa
tcgatcttcctgcgcgacgaggcgttcttcacgtgcgccaagcagcatgcacgcgtggcg
atcacccgcgagggtgacggactgccgtcggaaatctcggcaccgattccgaacgtggcc
gtgaaccgccatctggacgacccgttgatcaacctgcgcgcctacctgatgcagccgggc
cggcgcgtcatgatgtgcgccgattcgaacggccggcgcgagaccttgcagcagtatttc
ggcgaattcggcctgcaaccggcgctggtggaaggctaccagggcttcctggcgtcggac
gcgccgttcgcgctgggcgtggcgccgctgcagcaagggttcgagctgtcgctggacacg
ccgctggcgttcctgacggagacggagctgtacgccggctcgggccggcgtgtcggcaag
aagaagcaggaagcggtcacgcaggtcgagtcgatggtgcgcgacctgtcggaactgaag
atcggcgaccccgtcgtccacatcaaccacggcatcggccgctacatgggcctcgtcagc
atggacctgggcgaaggcgagacggagttcctgcacctggagtatgccaaggacaccaag
ctgtacgtgcccgtctcgcagctgcacgtgatctcgcgctattcaggcggtgcgcccgag
gatgcgccgctgcacgcgctgggctccggccagtgggagaaagccaagcgcaaggcggcc
gaacaggtgcgcgacacggcggccgaactcctgaacctgtacgcgcgccgtgccgcgcgc
cagggccacgcgttcgaatactcgtcgcacgactacgagcgcttcgccgagagcttcggc
ttcgacgagacgcccgaccaggccgcggccatcctgaacgtcatccgcgacatgacttcg
ggcaagccgatggaccgcctcgtctgcggcgacgtcggcttcggcaagaccgaagtggcg
ctgcgcgccgcgttcatcgccgtcatgggcggcaagcaggtggccatcctggccccgacg
acgctgctggccgagcagcacgcgcagacgtttgccgaccgtttcgccgactggcccgtg
aagatcgcggaaatgtcgcgctttcgcacgggcaaggagatcgccaacgccatcaagggc
atggcggacggcacgctcgacatcgtcatcggcacccacaaactgctgtcggaggacgtc
aagttcacgcgcctggggctcgtcatcatcgacgaggagcaccgcttcggcgtgcgccag
aaggaggcgctcaaatccctgcgcgccgaggtggacgtgctgacgctgacggccacgccg
attccccgcacgctcggcatggcgctggaaggactgcgcgacttctccgtcatcgccacg
gcgccgcagaagcgcctggccatcaagacgttcgtgcgcagcgagggcgagtcgatcatc
cgcgaggccgtgctgcgcgagctgaaacggggcggccaggtctacttcctgcacaacgag
gtggagacgatccagaaccgcctggcacagctgacggaattgctgccggaagcgcgcatc
gccgtggcgcacgggcagatgcacgagcgcgacctggaaaaagtcatgcgcgacttcgtg
gcgcagcgctacaacatcctcttgtgcacgacgatcatcgagacgggtatcgacgtgccg
acggcaaacacgatcatcatgcaccgcgccgacaagttcggcctggcgcagctgcaccag
ctgcgcgggcgcgtgggacggtcgcaccaccaggcatatgcctacctgctggtcaacgac
gtgcaaagcctgtcgaagcaggcgcagcgccgcctggacgcgatccagcagatggaggaa
ctgggcagcggcttctacctggccatgcacgacctggaaatccgtggcgcgggagaagtg
ctgggcgaaagccagtccggcgaaatgctggaagtgggcttccagctgtacaccgacatg
ctcaacgaggccgtgcgggcactcaaggccggcaaggagcccgacctggccgcgccgctg
tccaccacgacggaaatcaacctgcacgtgccggcattgctgccggccgacttctgcggc
gacgtgcacgaacgcctgtcgatctacaagcgcctggccaactgcacatcgcaggaagcc
attgacggcctgcaggaagagctgatcgaccgtttcggcaagctgcccgatcccgccaag
gcgctgatcgagacgcaccggctgcgcattgccgcgaagaccgtgggaattgttaaaatc
gacgcgcatggcgaagcagccaacctgcagttcatgccgaaaccgcccatcgacccgatg
cgcatcatcaccctgatccagaagaaccgccatatcaaactcaatgggcaggacaaactg
aagatcactgccgccatgccggacctgccggcccgcgtggcgcagatcaagaccgccatc
aaacaactgctcaattga
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