Micromonas pusilla: MICPUCDRAFT_12415
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Entry
MICPUCDRAFT_12415 CDS
T02696
Symbol
JGI:MicpuC2_12415
Name
(RefSeq) uncharacterized protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mpp
Micromonas pusilla
Pathway
mpp03022
Basal transcription factors
mpp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
09124 Replication and repair
03420 Nucleotide excision repair
MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpp03021
]
MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
03400 DNA repair and recombination proteins [BR:
mpp03400
]
MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
Transcription machinery [BR:
mpp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
DNA repair and recombination proteins [BR:
mpp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
9680918
NCBI-ProteinID:
XP_003055656
JGI:
12415
UniProt:
C1MIF1
LinkDB
All DBs
Position
Unknown
AA seq
476 aa
AA seq
DB search
PHTRAMASAFLGFISQLPPRHVDRLYNSPHACLAVLRSLPELAKHYCMRLMYVEGGVPSI
DMDEWVTDLGRDAHAESVRRMRELRVMLPLEDVTGAAGDGESLGLNPKFQRGMRSIMEGG
GFGDGFDDDDAATASDLGSALPSPEDLESYAKGRWEALLLTLTGASDAFAAAGANAADLD
VGALFRAAGLIGDASKGEKEGVTEAGFKFLLSTAREQIWALLDAPAVLSFLLKLTFQAPG
VAYSTDGLPASQKGVVRDVAKLGLLYPLAAAGKGYYVPTSLSSGLSGGGGGDDDGDGGVG
GGGKKSGDGGGVGARGHIIVETNFRVYAYTSSAVEVEILRLFTRPDYKLPNLYVGMMTRE
AVVTALRGGISAEQIVSYLRKHAHPQARKTPGPAIPATVCDQIRLWSKDENRVKYTPCVL
YCDFPTGTGMFEKVAEIAKERGLYLWGDPVGLKLAVREEGHESMKDVFKKIRAGEL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ccccacacgcgcgcgatggcgtccgcgtttctggggttcatctcccagctccctccgcgg
cacgtcgaccgcctgtacaactccccgcacgcgtgcctcgcggtcctgcgctcgctcccc
gagctcgcgaagcactactgcatgcgactgatgtacgtcgagggaggcgttccgtcgatc
gatatggacgagtgggtgaccgacctcggccgcgacgcgcacgcggagagcgttcgccgc
atgcgcgagctcagggtaatgctgccgctggaggacgtcaccggcgcggcgggagacggc
gagtcgctcggtctgaacccgaagtttcagcgcgggatgcgctccatcatggagggcgga
ggattcggcgacggattcgacgacgacgacgcggcgaccgcgagcgacctcgggagcgcg
ctgccgtcgcccgaggacctggagtcgtacgcgaaagggcgatgggaggcgctgctgttg
acgctcacgggcgcgagcgacgcgttcgcggcggcgggcgcgaacgccgccgacctcgac
gtcggcgctctgttccgcgccgcgggtttgatcggggacgcgtccaagggcgagaaagag
ggcgtcaccgaggcggggttcaagttcttgctgagcaccgcgcgggagcagatatgggcg
ctgttggacgcgcccgcggtgctgagcttccttctcaagctcacgttccaagcccccggg
gtggcgtactccacggacggcttgccggcgtcgcaaaagggcgtcgttcgagacgtcgcg
aaactcggtctgctgtacccgctcgcggcggcggggaaagggtactacgtcccaacgtcg
ctgagcagcggtctctcgggcggcggtggcggcgacgacgacggcgacggcggagttggg
ggcggggggaagaagagcggcgacggcggcggcgtcggcgcgcgggggcacatcatcgtg
gagaccaatttccgagtgtacgcgtacacgtcgagtgcggtcgaggttgagattttgcgg
ctgttcacgcgcccggattataagcttccgaacctgtacgtcgggatgatgactcgcgag
gcggtcgtgacggcgctgcgcggggggatcagcgcggagcagatcgtgtcgtatctgcgg
aaacacgcgcaccctcaggcgaggaagacgcccgggccggcgataccggcgacggtgtgc
gaccagattcggctgtggtccaaggatgagaatcgcgtcaagtacacgccgtgcgtgttg
tactgcgactttccgaccgggaccgggatgttcgagaaggtggccgagatcgcgaaggag
agaggattgtacctctggggggatccggtcggtctgaagctcgccgtgcgcgaggaaggg
cacgagagcatgaaggacgtcttcaagaagatacgcgcgggggaactgtga
DBGET
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