KEGG   Micromonas pusilla: MICPUCDRAFT_12415
Entry
MICPUCDRAFT_12415 CDS       T02696                                 
Symbol
JGI:MicpuC2_12415
Name
(RefSeq) uncharacterized protein
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
mpp  Micromonas pusilla
Pathway
mpp03022  Basal transcription factors
mpp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mpp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
  09124 Replication and repair
   03420 Nucleotide excision repair
    MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mpp03021]
    MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
   03400 DNA repair and recombination proteins [BR:mpp03400]
    MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
Transcription machinery [BR:mpp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
DNA repair and recombination proteins [BR:mpp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     MICPUCDRAFT_12415 (JGI:MicpuC2_12415)
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 9680918
NCBI-ProteinID: XP_003055656
JGI: 12415
UniProt: C1MIF1
LinkDB
Position
Unknown
AA seq 476 aa
PHTRAMASAFLGFISQLPPRHVDRLYNSPHACLAVLRSLPELAKHYCMRLMYVEGGVPSI
DMDEWVTDLGRDAHAESVRRMRELRVMLPLEDVTGAAGDGESLGLNPKFQRGMRSIMEGG
GFGDGFDDDDAATASDLGSALPSPEDLESYAKGRWEALLLTLTGASDAFAAAGANAADLD
VGALFRAAGLIGDASKGEKEGVTEAGFKFLLSTAREQIWALLDAPAVLSFLLKLTFQAPG
VAYSTDGLPASQKGVVRDVAKLGLLYPLAAAGKGYYVPTSLSSGLSGGGGGDDDGDGGVG
GGGKKSGDGGGVGARGHIIVETNFRVYAYTSSAVEVEILRLFTRPDYKLPNLYVGMMTRE
AVVTALRGGISAEQIVSYLRKHAHPQARKTPGPAIPATVCDQIRLWSKDENRVKYTPCVL
YCDFPTGTGMFEKVAEIAKERGLYLWGDPVGLKLAVREEGHESMKDVFKKIRAGEL
NT seq 1431 nt   +upstreamnt  +downstreamnt
ccccacacgcgcgcgatggcgtccgcgtttctggggttcatctcccagctccctccgcgg
cacgtcgaccgcctgtacaactccccgcacgcgtgcctcgcggtcctgcgctcgctcccc
gagctcgcgaagcactactgcatgcgactgatgtacgtcgagggaggcgttccgtcgatc
gatatggacgagtgggtgaccgacctcggccgcgacgcgcacgcggagagcgttcgccgc
atgcgcgagctcagggtaatgctgccgctggaggacgtcaccggcgcggcgggagacggc
gagtcgctcggtctgaacccgaagtttcagcgcgggatgcgctccatcatggagggcgga
ggattcggcgacggattcgacgacgacgacgcggcgaccgcgagcgacctcgggagcgcg
ctgccgtcgcccgaggacctggagtcgtacgcgaaagggcgatgggaggcgctgctgttg
acgctcacgggcgcgagcgacgcgttcgcggcggcgggcgcgaacgccgccgacctcgac
gtcggcgctctgttccgcgccgcgggtttgatcggggacgcgtccaagggcgagaaagag
ggcgtcaccgaggcggggttcaagttcttgctgagcaccgcgcgggagcagatatgggcg
ctgttggacgcgcccgcggtgctgagcttccttctcaagctcacgttccaagcccccggg
gtggcgtactccacggacggcttgccggcgtcgcaaaagggcgtcgttcgagacgtcgcg
aaactcggtctgctgtacccgctcgcggcggcggggaaagggtactacgtcccaacgtcg
ctgagcagcggtctctcgggcggcggtggcggcgacgacgacggcgacggcggagttggg
ggcggggggaagaagagcggcgacggcggcggcgtcggcgcgcgggggcacatcatcgtg
gagaccaatttccgagtgtacgcgtacacgtcgagtgcggtcgaggttgagattttgcgg
ctgttcacgcgcccggattataagcttccgaacctgtacgtcgggatgatgactcgcgag
gcggtcgtgacggcgctgcgcggggggatcagcgcggagcagatcgtgtcgtatctgcgg
aaacacgcgcaccctcaggcgaggaagacgcccgggccggcgataccggcgacggtgtgc
gaccagattcggctgtggtccaaggatgagaatcgcgtcaagtacacgccgtgcgtgttg
tactgcgactttccgaccgggaccgggatgttcgagaaggtggccgagatcgcgaaggag
agaggattgtacctctggggggatccggtcggtctgaagctcgccgtgcgcgaggaaggg
cacgagagcatgaaggacgtcttcaagaagatacgcgcgggggaactgtga

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