KEGG   Micromonas pusilla: MICPUCDRAFT_34341
Entry
MICPUCDRAFT_34341 CDS       T02696                                 
Symbol
JGI:MicpuC2_34341
Name
(RefSeq) histone deacetylase
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mpp  Micromonas pusilla
Pathway
mpp03082  ATP-dependent chromatin remodeling
mpp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mpp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
   03083 Polycomb repressive complex
    MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mpp03036]
    MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
Enzymes [BR:mpp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
Chromosome and associated proteins [BR:mpp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
   HDAC complexes
    Sin3A-HDAC complex
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
    BRAF-HDAC complex
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
    REST complex
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
    SHIP complex
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
    MiDAC complex
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
  Chromatin remodeling factors
   NuRD complex
    MICPUCDRAFT_34341 (JGI:MicpuC2_34341)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 9685298
NCBI-ProteinID: XP_003060152
JGI: 34341
UniProt: C1MW44
LinkDB
Position
Unknown
AA seq 430 aa
MAPSKDRISYFYDADVGTSYYGNNHPMKPHRLAMTHHLVLSYDLHKKMEVYRPRRSYPVE
MSQFHAEDYVDFLSRITPDTQQDHTEQMQRYNLGEDCPIFDGLFDFCKLYTGGSIDGAVR
LNHGLSDIAINWSGGLHHAKKSEASGFCYINDLVLAILELLKHHPRVLYIDIDIHHGDGV
EEAFYLTDRVMTVSFHKYGDMFFPGTGALKDVGGDAGKYYSVNVPLLDGMDDAGFRAIFK
SVMQKVMDVYQPGAVVLQCGADSLAADRLGCFNLTLDGHADCVKFMKRFNVPLLVTGGGG
YTKSNVARCWTYETAALLDKTLSTDIPEHDFYYEYYADVGYKMKVQPTNYIENLNTKTYL
QDVKQQVMENLRALEHAPGVGMHEVPPDSMIPEFDEDELNPDERYGGAAGMDKLVFGDDE
FYEDDKDQDR
NT seq 1293 nt   +upstreamnt  +downstreamnt
atggcgccgagcaaggaccgcatctcctacttctacgacgcggacgttgggacgtcgtac
tatgggaacaatcacccgatgaagccgcatcgtctcgcgatgacgcatcacctcgtgctg
tcgtacgatctgcacaagaagatggaagtctaccgcccgcgtcggtcgtaccccgtggag
atgtcgcagttccacgcggaagattacgtggatttcctctctcgcatcaccccagacacg
caacaggaccacaccgagcagatgcaacggtataacctcggcgaggactgccccatattc
gacggtctgtttgacttttgcaagctgtacacgggcgggagcatcgacggcgcggtgcga
ttgaaccacggcctcagcgacatcgcgatcaactggtccggggggttacaccacgcgaag
aagtcggaggcgtccgggttctgttacatcaacgatttagtcctcgcgatcctcgaactc
ctgaagcatcacccgagggttctgtacatcgacatcgacatccaccacggcgacggcgtg
gaagaagctttttatttaaccgacagagtcatgaccgtgtcgttccacaagtacggcgac
atgttcttccccggcaccggcgcgctcaaagacgtcggcggcgacgcggggaaatattac
agcgtcaacgtccctctcctagacggcatggacgacgccgggtttagggccatcttcaag
tccgtgatgcagaaagtcatggacgtgtaccagcccggcgcggtcgtgcttcagtgcggc
gcggactcgctcgcggcggacaggttaggatgcttcaacctgacgttggacggacacgcg
gactgcgtgaagtttatgaagcggttcaacgtgcctctgctggtgacgggcggcggcggg
tacacgaagtccaacgtcgcgcggtgctggacgtacgagaccgcggcgcttctggacaag
acgttgtccacggacatcccggagcacgatttctactacgagtactacgcggacgtgggg
tataagatgaaggtgcagccgacgaattacatcgaaaacttgaacacgaagacgtacctg
caggacgtaaagcagcaggtgatggagaacttgcgcgcgttggagcacgcgccgggggtg
gggatgcacgaggttccgccggactcgatgatcccggagtttgacgaggacgagttgaac
ccggacgagaggtacggcggcgcggcgggaatggacaagttggtcttcggcgacgacgaa
ttttacgaggacgacaaggaccaagaccggtga

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