Marinobacter psychrophilus: ABA45_05470
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Entry
ABA45_05470 CDS
T03980
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpq
Marinobacter psychrophilus
Pathway
mpq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABA45_05470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpq03400
]
ABA45_05470
Enzymes [BR:
mpq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABA45_05470
DNA repair and recombination proteins [BR:
mpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABA45_05470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKO51938
UniProt:
A0A0H4I291
LinkDB
All DBs
Position
complement(1230732..1234241)
Genome browser
AA seq
1169 aa
AA seq
DB search
MTSTTLLAPEFPKKPADHRVWGQLHGSSDALAVCESARNHQGLTLVITRSTADAIRLEQA
MRFFLGLPAEEDGPAVSADGLELLSLPDWETLPYDQFSPHQDIISRRIRTLHRLPSTAHG
VLVVPARTLMHRLPPVNYLQGNTLLLKVGQSLDINSWRLQLEAAGYRYADNVYEHGEYAV
RGAILDIFPMGASQPYRIDLFDNEIETLRTFDPDTQRSVDRIQQVELLPAFEFPWDKQAR
SAFRGRWFEQFPNADKSAPVYQDVSQGITSPGIEYYLPLFFDATATLFDYLPASTRVFTA
DGLNESVQQFDSETRNRHEERRHDRVRPIMPPTQLFLQQDELFGLLKQFPRVTTRTATDD
GSGSVNCAARELPDIAMDGRAADPAGRLKRFISEFDGRILICAESSGRREALIDNLAQQS
LQLQALDSWQSFLDSPKCSLGITIAPMEQGLVLPDRQLALITETALFGDRVLQRRRREKP
TELNDDGYRDLSELRIGSPVVHIDHGVGRYQGLETITVEGEASEFLMLGYAGSSKLYVPV
SSLHLISRYAGSDTEHAPLHKLGTDRWNNAKKKALEKIRDTAAELLDVYARREARKGFSF
ENPQEAYRTFAAGFPFEETPDQEVAIMAVLEDMTSERPMDRLICGDVGFGKTEVAMRAAF
VATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTAVNVELLSRFRSGSQTNKALEAMENGK
ADIVIGTHKLLQGDIRFKNLGLVIIDEEHRFGVQQKEKLKALRAEVDMLNLTATPIPRTL
NMAMGHLRDLSIIATPPARRLSVKTFVRQRDEPMVKEAILREILRGGQVYFLHNNVTSIE
KTAADLRQLIPEARVGVAHGQMRERDLEQIMKDFYHKRFNVLVCTTIIETGIDVPTANTI
IIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAISSDAKKRLEAISEAQDLGAGF
MLATQDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAELPLSHGTE
MNLRIPALIPDDYLPDVHNRLMLYKRISSVANDEQLKELQVEMIDRFGLLPQPAKNLMRQ
AALRMRAEALGVIKVDAGKEWARLEFGNSTSVDPLALIKKVQSDPGEYRLEGANSFRFRL
NDTSTGGKLDGIAAMFDELAPAKSSGRPR
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcactaccctgcttgccccggagttcccaaaaaagcctgccgatcatcgtgtc
tggggtcagcttcatggcagcagtgacgctctggcagtttgtgaaagcgcgcgcaaccat
caggggttaaccctggtgatcacccgcagcaccgccgatgccatccgcctggaacaggca
atgcggttttttctgggcctgccagcagaagaagacggcccggccgtaagcgctgatggt
ctggagttgctgtcgctgccagactgggaaaccctgccttacgaccagttttcgccccat
caggatattatttcccgccgcattcgcaccttgcatcgcctgccctctaccgcacacggc
gtgcttgttgtacctgcgcgcaccctgatgcaccgcttaccgccggtaaattacttgcaa
ggcaacaccctgctgttaaaagttggccaatcgcttgacatcaacagctggcgtttgcag
ctcgaagcggccggctaccgctatgccgacaatgtttatgagcacggcgaatacgctgtg
cgcggcgccattctggacattttccccatgggcgccagccagccctaccgcattgatttg
ttcgacaacgaaattgaaaccctgcgcacctttgacccggacacccagcgctcagtcgat
cgcattcagcaggtggaactgctgccggcgtttgagttcccttgggataaacaagcccgt
tcggcgtttcgcgggcgctggttcgagcaattccccaacgcagacaaaagcgcgcctgtg
tatcaggacgtcagtcagggcatcacatcgccaggcattgaatattatttgccgctattt
tttgatgccactgccacgctttttgattatctgccggccagtactcgggtgttcactgca
gacggcctgaacgaatcagtgcagcagttcgacagcgaaacccgtaaccgtcatgaagaa
cgccgccacgaccgcgtgcggccaatcatgccgccaacccagctgtttttacagcaggac
gagctgtttgggctgctcaagcagtttcctcgggtaaccacccgcacagccaccgacgac
ggcagcggcagcgtgaactgtgccgcccgcgaactaccagacatcgccatggacggacgc
gcagcggaccctgccgggcgcttaaaacggttcatcagcgaattcgacggtcgcattctg
atttgtgccgaatcgtctggccggcgcgaagcgctgatcgacaacctcgcccaacaatcc
ctgcaacttcaggcgctagacagctggcagagttttctggatagcccaaaatgcagtctg
ggcattaccatcgcgcctatggagcagggcttggtgctgccagaccggcaactggcgctg
atcaccgaaacggctctcttcggtgatcgagtgctgcaacgcaggcgtcgggaaaagccc
actgaactaaatgacgacggctaccgcgacctttcggaactgcgtatcggctcgccggtg
gtgcacattgaccacggtgtgggccgctatcagggtttggaaaccatcaccgtggaagga
gaagccagcgaatttctgatgctgggatacgctggcagctccaagctgtatgttcctgtg
tccagcctgcatctgatttcacgttacgccggcagcgacaccgaacacgcgccgctgcac
aagctgggcaccgatcgctggaacaacgccaagaaaaaagctctggagaaaatacgcgac
actgctgctgagcttttagacgtgtacgcccgccgcgaagcccgcaaaggcttcagcttc
gagaacccgcaggaagcctaccgcacctttgcggctggcttcccgttcgaggaaacaccg
gatcaagaagtggcgattatggcggtgctggaagacatgaccagcgagcgcccgatggat
cgtttgatttgcggcgacgtaggctttggcaaaaccgaagtggccatgcgcgccgcgttt
gtagcgacctggtctggcaaacaggtggcggtattggtgcctacgactctgctggcgcag
caacattacgaatctttccgcgaccgcttttcggataccgccgttaatgtagagttgctc
agccgcttccgcagcggcagccaaaccaataaagcgttggaggccatggaaaatggcaaa
gccgatattgttattggcacccacaaactgctgcaaggcgacattcggttcaaaaatctg
ggcttggtgattattgatgaagagcaccgcttcggggtgcaacagaaagaaaagttaaag
gcgctgcgggccgaagtcgacatgctcaacctgaccgccacgcccattccccgcaccttg
aatatggccatgggccacctgcgtgacctgtccatcattgcgacaccaccggcgcggcgt
ttgtcggtaaaaacctttgtccgccagcgcgacgaacccatggtgaaagaagcgattttg
cgggaaatcctgcgtggcggtcaggtgtactttctgcacaataacgtgaccagcatcgaa
aaaactgcggcagacctgcgccaactgattcccgaagcccgcgttggcgttgcccacggc
cagatgcgcgaacgcgatctggaacagatcatgaaagacttttatcacaagcgctttaac
gtactggtgtgtaccaccatcattgaaaccggcatagacgtgcccaccgccaacaccatt
attatcgagcgcgcggataaattcggtctggcccagctgcaccagttgcgaggccgggtg
ggccgatcccaccaccaagcctatgcttacctgctcacaccgccaccgaaagccatcagc
tcagatgcaaaaaagcgcctggaggctatttctgaagctcaggatttgggcgccggcttt
atgctggccacccaagacctcgaaatccgcggcgctggcgaactgctgggcgaggagcag
agcgggcaaattgaaagcattggctttaccctgtacatgcaactgctggacgaagcggta
aaggccatccgcgaaggccgtacgcccaacgcagagctgccactgagtcacggcaccgaa
atgaatttgcgcatcccggcgctgattccggacgattacctgccagacgttcataaccgg
ctaatgctgtacaaacgcatttccagcgttgccaatgatgaacaattaaaagaacttcag
gtagaaatgatcgaccgttttggattgctgccgcaaccggccaaaaatctgatgcgccag
gcagcgctgcggatgcgcgccgaggctctgggcgtcatcaaggtagacgctggcaaggaa
tgggcgcgactggaatttggcaacagcaccagcgtagacccgctggcactgattaagaaa
gtgcaatctgaccccggtgagtatcgcttggaaggcgccaacagtttccgtttccggctg
aacgacacctcaaccggtggtaagcttgatggcattgccgctatgttcgatgaactggca
ccggccaaatcctcaggccggccccgatga
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